Salmo trutta (river trout): 115173581
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Entry
115173581 CDS
T08542
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stru00535
]
115173581
Proteoglycans [BR:
stru00535
]
Extracellular matrix (ECM) proteoglycans
Others
115173581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
DUF4959
VWA_3
DUF4992
Motif
Other DBs
NCBI-GeneID:
115173581
NCBI-ProteinID:
XP_029587669
Ensembl:
ENSSTUG00000036579
LinkDB
All DBs
Position
34:complement(11160211..11249699)
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AA seq
1905 aa
AA seq
DB search
MPATGLKMWVWNPLLCLALISLSPAPAQGQVATPRRLRFKVLSATQLHVSWKEPKGDFES
YRFIYSTQSDAEETELEVTKKEAKVIIDFDPRKLYTVKVTAVKGAQESKPLLGTFEAQLS
EPDIKNVQPQNVRPKNQKDTSGTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFR
LVRMFLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGGNT
LTGLALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVQPPARSLREAGIELFAIGVK
NADEKELKAIGSPPEETHVYNVADFSVMSSIVEGLTRTVCDRVEQLDKAIKGDTGPEVTM
AAPRDLVTSEVTARSFRVSWTHAPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNYLL
SLTEYQVAVFAIYASSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASGYM
ILYAPLTEGDAADEKEVKVAETVNEVELESLTPDTEYTVTVYAMYGEEASDPMTSQETTL
PLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLRNL
TSLTEYTVAIFALYDEGQAEPLTDSFTTKTVPEPLNLKTSEVSTESFRVTWEHSAQDVVL
YRLTWTPTRGGDTKEMLVNGNRNSHLLAGLRPVTEYEVSLIAVFRNEEESDAVTLTESTV
ARTTTTTKATTTTTTTRATTTAVVHLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYV
TARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYTDGVGPGVSRMGRTLPLSAPR
NLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGT
EYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSAHRHATLYRVVIE
SLLNGHKQEARLGGGATRHCFNDLTANTQYKISVYAQLQDTEGPAVTTTERTFPVPTPAP
TRPPTTTPPPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTIGP
DGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVG
GGIRRGIPKVVVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSER
HVFFVDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGHVS
GVSMEPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLSETPKEPFALWE
ILNKDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAISKT
NAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRAKKDNSAPFQLQSFDIVCSTSWA
SRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAVGP
IGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPGRE
GQTGTRGLPGKDGPQGRTGPPGTMGTPGAPGSPGSSGPPGSLGDQGPPGSAGNKGEKGER
GDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPASVRTIPGPPGEPGRQGSPGP
QGEQGPAGRPGFPGSNGENGQPGARGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGRTG
SQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGNGGDPSDHRNLPLV
QLPPNVYQNYDEAEAEDPYRYDAGGYPSEYYQPNYPAPRPVEPEDPALTQGDEVLRSPGI
HRSSRSLAEEEEEKKEEEGPEERKMVGPMKKSRLRRVLRKSGTHD
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atgccggctacaggactgaagatgtgggtatggaatcctctactctgtctggctcttatc
tctctctcacctgcaccagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagagccgaaaggagactttgaaagc
tacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtgacaaag
aaggaagccaaagtgatcatagactttgaccccagaaagttatacacagtcaaggtcact
gctgtgaaaggtgctcaggagagcaagccacttctaggaacatttgaggcccaactttca
gagcctgacattaagaacgtacagccccagaatgtacgacccaagaaccagaaagacacc
agtggcacagaggagaacaatgagatatctgaagagcagttcatgtgtaagacaccggcc
atagcggatattgtgatcctggtggacggatcatggagtatcggacggataaacttccgt
ctggtccgcatgttcctggagaatctggttagcgccttccatgtggagtttgacaagaca
cggattggtctggcccagtatagtggtgaccccaggattgagtggcacctgaacactttc
accaccaaagaagcagtcatcgacgctgtgaagaaccttccctacaaaggagggaacaca
ctgacgggtcttgcattgacgtacatccttgagaacagttacaaacccgagtccggatcc
agggccggcgttcccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtc
caacccccggcgcggagtctgagagaggcgggaatagagctgtttgccattggtgtgaag
aacgccgatgagaaagagctgaaggccattggctcgcctccagaggagacgcacgtctac
aacgtggctgacttcagcgtcatgagctccatcgtggagggtctgaccaggaccgtctgc
gaccgggtcgaacagcttgacaaggccatcaaaggcgacacaggcccagaagtcaccatg
gccgctcccagagacctggtgacctcggaagtgacggccaggagtttccgggtgtcgtgg
acccacgcccctggcacggtggagaagtaccgggtggtgttctaccctgccagcgggggc
cagcccgaggagaaggtggtgcagggcacagtggacacggtggtgctcaactacctcctc
tccctgactgagtaccaggtggccgtgttcgccatctacgccagctcagctagcgaggcc
ctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctgtttgac
atcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggctacatg
atcctctatgccccactgaccgagggagacgctgccgacgagaaggaggtgaaagtggct
gagacggtgaacgaagtggaactggagagcctgactccagacacagagtacacagtgacc
gtgtacgccatgtacggagaggaggccagtgaccctatgaccagtcaggagaccacgcta
cccctgaccccggcgcggaacctgcgcttctctgacgtcgaccacagctcggccaggctc
acctgggaggcgacgtccaagaaggccaacggctaccgcatcatgtacgtcaagacaaac
ggagtgcagaccaatgagatggatgttggccgcatcaccaccctgttgctgaggaacctg
acgtcattgacagagtacacggtggccatatttgctctctatgatgagggccaggcagag
ccccttactgacagcttcaccactaagacagtcccagaacctctgaacctaaagaccagt
gaagtctccacagagagcttcagggttacctgggaacactcagcccaagacgtggtcctc
tacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtgaatggt
aacaggaacagccacctgctggctggactgaggcccgtcactgagtacgaagtctctctg
attgctgtctttagaaacgaggaggaaagcgacgccgtgaccctcacagagtcaacagtg
gcaagaacaacgactaccacaaaagctaccacaaccacgactaccacacgagctaccacc
acagcagttgtgcatctgggggtgaggaacctcctgcttagtgatcacaccaccttcagc
atggaggtgtcctgggagctgcaggaccgcaatgtgcgtcagtaccgcgtcgcctatgtc
accgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaacagcctg
ctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccggtctacacc
gacggagtcggccccggtgtcagccgcatgggacgcaccttgccactgtctgctcctagg
aacctgagagtgtcggaggaatggtacaaccgcttccgtatcacctgggacacgccccca
tccccaactatgggctacagggtcgtttacaaacccatctctgctccgggacctgctctg
gagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtaca
gagtacggcgtcagggtcatcgcctcctacactaccggctccagcgaggccctcactggc
aaggccaggacattatacctgggagtgaccaatctgaacacctaccaggtgaggatgaac
agcatgtgtgcccagtggagtgcccaccgccacgccactctgtaccgtgtggtcatcgag
tcgctgctcaatggacataaacaggaggcaaggctgggaggaggagccacccgccactgc
ttcaatgacctgacagctaacacgcagtacaaaatcagtgtgtacgcccaactccaggac
acagagggacctgcagtcaccaccacagagagaaccttccctgttcccaccccggcaccc
accagaccacccactaccacccctcctcccaccataccctcaactaaggaagtttgcaag
gcagccaaggcagacctggcgttcctagtggatggctcctggagcatcggggatgaaagc
ttcctgaaaatcatccgcttcctgtacagcaccacaggagccctcgacaccattggacca
gatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttcaaactc
aactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctacaaggga
gggaacaccaagacagggctagccatcaggcatgtgaaagacaccatcttcacggtgggg
ggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgctctcag
gacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgtttttgccatt
ggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagcgagaga
cacgttttctttgtggacgatttagacgccttcaagaaaattgaggaaaagctggtcacc
tttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagtaccttg
ccaggtttcaggatgatggagatgtttggcctggtggagggtctgtatggacatgtatca
ggagtgtccatggagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaac
tccctcctcgcccagcccaccaagtttatccaccctgagggcttgccctccgattacacc
atcaccatgctgttccgcctgctgtctgaaacccccaaagagccctttgcattgtgggag
atcctcaacaaggacaacgagcccctggtgggcgtcatcctggacaacggtggcaagacc
ctcaccttcttcaaccacgactacaaaggacagtttcagactgtgaccttcgagggacct
gagatcaagaagctcttctacggcagtttccacaagctgcacctggctattagcaagacc
aacgccaaggctgtcatcgactgtaagctggtgggggagaaggccatcaacgcggcgggc
aacatcaccacagatggcctggaggtgctgggacgaatggtgcgctcccgggcgaagaag
gacaactctgcaccgtttcagctgcagtcgtttgacatcgtctgcagcacgtcctgggcc
agccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcctgccatg
ccccgtgcctgcacctgcacacaggacagcaaaggcccccccggccccactggaccccct
ggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtggggccg
ataggtccagttggggacgctggtactcctgggctgcaggggcctcctggcccccagggc
cccagcggccgcaccatcatgggcccccctggtggtccaggagagagaggtgagaagggt
gcagctggcgctccaggaatacagggcattcctggatctcctgggtcaccaggtcgagag
ggacaaacaggaacaaggggactgcctggtaaagatggaccccaggggcgaacaggacct
ccagggactatgggcactccaggagctcccggctcaccagggtcaagtggaccaccaggg
tcactgggagaccaaggacctcctggttctgccggaaacaaaggagagaagggagaaaga
ggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcagctg
atacagagtcacatggctcgctacagctccatcctcaaccacatccccagtgcacccgct
tcggtccgcaccattcctggacccccaggagagcccgggcggcagggcagcccaggacca
cagggagagcaggggcccgcgggcagaccagggttccccgggtccaacggagagaatgga
caaccaggagccagaggtttgtcaggagagaagggtgacaagggaagcccaggtgtagga
gtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcggacaggt
agccagggtccgtctggtcggccggggaaccctggaactcctgggcggccgggtatccct
ggaccagtggggtcggctgggcctcctggatactgtgaccagaactcttgcgtgggctac
aatgtaggagagggtggcaacggtggtgacccatctgaccaccgcaatcttcccttagtc
caattgccccccaacgtctaccagaattatgacgaggcggaggcggaggacccctatagg
tacgacgcggggggctacccctccgagtactatcagcccaactacccggcgccccgacca
gttgagcccgaggacccagccctgacccagggcgacgaggtgctgaggtcccccgggatc
caccgctcctccaggagcctggctgaagaggaggaggagaagaaagaggaagaggggccg
gaggagaggaaaatggttggtcccatgaagaagagcaggctaaggagagtcttgaggaag
tcggggacacacgactga
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