Salmo trutta (river trout): 115173900
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Entry
115173900 CDS
T08542
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
stru
Salmo trutta (river trout)
Pathway
stru03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115173900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115173900
03036 Chromosome and associated proteins [BR:
stru03036
]
115173900
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115173900
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115173900
PBAF complex
115173900
GBAF(ncBAF) complex
115173900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Omp_AT
DUF919
Motif
Other DBs
NCBI-GeneID:
115173900
NCBI-ProteinID:
XP_029588259
LinkDB
All DBs
Position
34:25131426..25156822
Genome browser
AA seq
977 aa
AA seq
DB search
MATTSGGPNIGTPGTSQSPHTTTAQRKKDGSPSARYWESHDTLVQLETVRQWIGKHYKKY
VQADSPSCQALASLTLQLLQFQEEVFGRRAEIRTHTKLPSQCFLDLRPGGGLCHILGTAY
KFKTDQGWRRFDLQNSSRTDRNVEMFTTLEKTLVQNSCLSRPVVYVDQEVDQNLNSRLAD
IITKHQGSLTEDRIQASHHIYPRPAVTDQDWEWVRPVMRKDNYVLVHWGRHPDSYDSWLS
SSDVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVDDRNVPLILRRRVHVTDQ
QDRKFTPVKKRRRSPSPPPSDGKKKGGKKSGGFKRRGPKEEEEEVEEDLTKDMEDPTPVP
NMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLLPGGREDEEGREGLRLSDGEDN
ITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNKSKSPEIYLAYRNFMIDSYRLN
PQEYLSSTSCRRNLTGDVCAVMRVHALLEQWGLVNYQVDAESRPLPMGPPPTPHFNTLAD
TPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFGLRTDLYARKHPKSKGASSGRD
WTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSASSLGPLA
YQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEEFCRVREEADKVLEFPALNEAE
KADVMDGEKMESGSQQPLQADRQTVLEPSGGERSVEGERVKRENAEMTVTEERDGDSGGN
CETDRGEKDEIAGRWREVERDEGRRLAELELVDGTVTTAAAAALGAAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQSFHSEQLKHA
EMKILQQREQQAPYTPQQHTGQSMPSQMMPTGGNSLTMAPRHSGAPNGMYPPAQPDGIAP
TQPGPPSTAIHSRGAET
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgtctgggggacccaacatcgggactcccgggaccagccagagtccacat
accaccacagcacaacggaaaaaagacgggagtccgtccgcgaggtactgggagagccac
gacaccctggttcagctcgagacggtgcgacagtggatcgggaagcactacaaaaagtat
gtgcaggcagactctccatcctgccaggctctagcctccctcacccttcagctgcttcag
ttccaggaggaagtgttcggcagacgggccgaaatccgcacacacaccaaactaccgtct
cagtgcttcctggacctgcgcccaggaggcgggctttgccatatccttggcactgcctac
aagttcaagactgatcagggttggagaaggtttgacctacagaactcctccaggacggac
cgtaacgtagagatgtttactactctggagaagaccctggtccagaatagctgtctgtcg
aggcccgtcgtgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgac
atcatcaccaaacaccagggttcgttgactgaggacagaatccaagcctctcaccacatc
tacccccgtccagctgtcacagaccaagattgggagtgggtgcgccctgtcatgcggaag
gacaactatgtgttggtgcactggggcaggcaccctgacagctacgatagctggctctcc
tccagtgacgtagagggagaggtgcaggaacctccacatacacacagaccttggagggtg
cacgcaggctgggtgttggatacagaggtgtataatgagtggatgaacgaagaagactac
ctggtagatgacagaaacgttcctctcatcctccgccggagagtccatgtcacagaccaa
caggaccgtaagtttactccagtgaagaagagaagacgctccccctctcctcctccttcc
gatggcaaaaagaaaggaggaaagaagagtggtgggtttaagaggcgtgggccaaaggag
gaagaggaagaagtagaggaggatctgactaaagatatggaggatccaacacctgtccct
aatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgagaacact
cctgtcaaaggagggatgatgactgacctggatgaaattgaggatgactctctgcttcct
ggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaagacaac
atcacagaacaaactcaccacatcatcgtcccgtcctacaccgcctggttcaactataac
tgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaacaagtcc
aaatctccagagatatacctggcatatcgtaacttcatgattgactcgtaccggctgaac
ccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacgtctgcgcc
gtcatgagggttcatgcgttgttggagcagtgggggttagtgaactaccaggtggatgca
gaaagcagacctctccctatgggaccccctcccacccctcacttcaacacactggctgat
acaccctcaggactggccccgctgcagcacagaccactacaggtgtcgtcctcccagcag
atgttattcttccctgagagaagtgtagagaagccctcagactctcagaactttggcctc
agaacagacctgtatgccagaaaacaccccaagagtaaaggagccagttcaggaagggat
tggacagaacaggagaccctcctactgttggaggcgttagaggtctatagagatgactgg
aacaaggtgtcagaacacgtggggtctcgtacccaggacgagtgcatcctccacttcctg
cgcctaccaatagaagacccatatctggaggactccgcctcctctcttggcccattggcc
taccagcccgttcctttcagccaatcagagaatccagtgatgagcaccgtggcgttcttg
gcgtccgtggttgatccccgagttgcctccgccgccgccaaggctgctttggaggagttt
tgtcgtgtgcgtgaggaagctgacaaggttctggagttccctgcactcaatgaggctgag
aaggcagatgtgatggatggtgagaagatggagtctggctcccagcagcctctgcaggcg
gatagacagacggttctagagcccagtggaggggagagatcagtagagggagaacgagtt
aagagagagaatgctgaaatgacagtcacagaggagagagacggcgatagcggagggaac
tgcgagacagaccgaggggagaaggatgagattgcggggcgatggagggaagtagagcgg
gatgaagggaggagactagcagagctggagttggtagatgggaccgttaccacggcagca
gctgctgctctaggcgccgctgctactaaggccaagcacctagcagcggtagaggagagg
aagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggagatcaaa
ctgagacattttgaggagctggagaccatcatggaccgagagaaagaggctttggagcaa
cagcgtcagcagctgttgtcagagcgacagagtttccactctgagcagctgaaacatgca
gagatgaagattctacagcagagagagcagcaagcaccatacactccacaacaacacaca
ggccagtccatgcccagccagatgatgcctactgggggaaactctctcaccatggccccc
cgacactctggagctcccaacggcatgtacccaccagcacagcctgatgggatagctccg
acccagcctggtcctccaagcacagccatacacagccggggagcagaaacatga
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