KEGG   Salmo trutta (river trout): 115174133
Entry
115174133         CDS       T08542                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
stru  Salmo trutta (river trout)
Pathway
stru03082  ATP-dependent chromatin remodeling
stru03083  Polycomb repressive complex
stru04110  Cell cycle
stru04330  Notch signaling pathway
stru04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115174133
   03083 Polycomb repressive complex
    115174133
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    115174133
   04350 TGF-beta signaling pathway
    115174133
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    115174133
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:stru03036]
    115174133
Enzymes [BR:stru01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     115174133
Chromosome and associated proteins [BR:stru03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     115174133
   HDAC complexes
    Sin3A-HDAC complex
     115174133
    BRAF-HDAC complex
     115174133
    REST complex
     115174133
    SHIP complex
     115174133
    MiDAC complex
     115174133
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     115174133
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    115174133
  Chromatin remodeling factors
   NuRD complex
    115174133
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 115174133
NCBI-ProteinID: XP_029588686
Ensembl: ENSSTUG00000015869
UniProt: A0A673Z3Z7
LinkDB
Position
34:38384756..38398093
AA seq 485 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ANGEEMTKYHSDDYIKFLRSIRSDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQMDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKDETEEKKEVKEEDKDAEEKMDTTGPKE
ETKTC
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgctactattatgatggcgac
gtgggtaattattactatggtcagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctgctgctcaactatggactgtacaggaagatggagatatacagaccccacaag
gccaatggagaggagatgaccaagtaccacagtgacgactacatcaaattcctgcgttcc
atccggtcagacaacatgtcagaacacagcaagcagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctctcaacgggaggctctgtc
gcgggggcagtgaagctaaacaagcagcagatggacatcgccatcaactgggccggagga
ctccatcacgccaagaagtctgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaaataccaccagagggtgttgtacgtagacatcgacattcac
catggagacggagtggaagaagctttcttcaccacagaccgggtcatgactgtctccttc
cacaagtatggagaatacttccctggcaccggagacctgagggacattggagcagggaag
gggaagtactatgctgtaaactaccctctcagagacggcatcgacgacgagtcttatgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgtttcagcccagcgctgtagtg
ttacagtgtggagcggactctctctctggagacagactgggctgctttaacctgaccatc
aaaggtcatgctaagtgtgttgagtacatgaagagtttcaacctgcctctgctgatgttg
ggaggtggtggttataccatccgtaacgtggcccgctgctggacctacgagaccgccgtg
gctctggacagcaccatacctaacgagctgccatacaacgactactttgagtactttggc
cctgacttcaagctccacatcagtccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgtatgctgcctcacgccccgggg
gtccagatgcaggccatccctgaagacgctccacacccggactctggagacgaggaggac
gaggaccctgacaaacgcatctccatcagggcccatgataagaggatagcctgtgaagag
gagttctctgactctgaggatgagggacagggaggagggggaaggaggaacgctgccaac
cacaagaagacaaaacgagtcaagactgaggaggagaaagacgagacagaagagaagaaa
gaagtgaaagaggaggataaagacgcagaagagaagatggatacaaccgggccaaaagaa
gaaactaagacgtgttga

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