Salmo trutta (river trout): 115174133
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Entry
115174133 CDS
T08542
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03082
ATP-dependent chromatin remodeling
stru03083
Polycomb repressive complex
stru04110
Cell cycle
stru04330
Notch signaling pathway
stru04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115174133
03083 Polycomb repressive complex
115174133
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
115174133
04350 TGF-beta signaling pathway
115174133
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
115174133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
stru03036
]
115174133
Enzymes [BR:
stru01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
115174133
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
115174133
HDAC complexes
Sin3A-HDAC complex
115174133
BRAF-HDAC complex
115174133
REST complex
115174133
SHIP complex
115174133
MiDAC complex
115174133
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
115174133
Heterochromatin formation proteins
Other heterochromatin formation proteins
115174133
Chromatin remodeling factors
NuRD complex
115174133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
115174133
NCBI-ProteinID:
XP_029588686
Ensembl:
ENSSTUG00000015869
UniProt:
A0A673Z3Z7
LinkDB
All DBs
Position
34:38384756..38398093
Genome browser
AA seq
485 aa
AA seq
DB search
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ANGEEMTKYHSDDYIKFLRSIRSDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQMDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKDETEEKKEVKEEDKDAEEKMDTTGPKE
ETKTC
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgctactattatgatggcgac
gtgggtaattattactatggtcagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctgctgctcaactatggactgtacaggaagatggagatatacagaccccacaag
gccaatggagaggagatgaccaagtaccacagtgacgactacatcaaattcctgcgttcc
atccggtcagacaacatgtcagaacacagcaagcagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctctcaacgggaggctctgtc
gcgggggcagtgaagctaaacaagcagcagatggacatcgccatcaactgggccggagga
ctccatcacgccaagaagtctgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaaataccaccagagggtgttgtacgtagacatcgacattcac
catggagacggagtggaagaagctttcttcaccacagaccgggtcatgactgtctccttc
cacaagtatggagaatacttccctggcaccggagacctgagggacattggagcagggaag
gggaagtactatgctgtaaactaccctctcagagacggcatcgacgacgagtcttatgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgtttcagcccagcgctgtagtg
ttacagtgtggagcggactctctctctggagacagactgggctgctttaacctgaccatc
aaaggtcatgctaagtgtgttgagtacatgaagagtttcaacctgcctctgctgatgttg
ggaggtggtggttataccatccgtaacgtggcccgctgctggacctacgagaccgccgtg
gctctggacagcaccatacctaacgagctgccatacaacgactactttgagtactttggc
cctgacttcaagctccacatcagtccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgtatgctgcctcacgccccgggg
gtccagatgcaggccatccctgaagacgctccacacccggactctggagacgaggaggac
gaggaccctgacaaacgcatctccatcagggcccatgataagaggatagcctgtgaagag
gagttctctgactctgaggatgagggacagggaggagggggaaggaggaacgctgccaac
cacaagaagacaaaacgagtcaagactgaggaggagaaagacgagacagaagagaagaaa
gaagtgaaagaggaggataaagacgcagaagagaagatggatacaaccgggccaaaagaa
gaaactaagacgtgttga
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