Salmo trutta (river trout): 115174439
Help
Entry
115174439 CDS
T08542
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115174439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115174439
Spliceosome [BR:
stru03041
]
Complex C
Other components
Step II factors
115174439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
EIF3I
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_NWD2_C
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
115174439
NCBI-ProteinID:
XP_029588814
Ensembl:
ENSSTUG00000023272
LinkDB
All DBs
Position
35:1163560..1186546
Genome browser
AA seq
572 aa
AA seq
DB search
MAATLVSYWCDSDNETKSHVNPEKVDPDALAHLQPLKSGKTMSLTVLNSAPEVAVKEAVE
TGVHLDPSLKEVTYNPTYETMFAPEFGPVNPYKSQQMAAPRNMLSGYAEPAHVNNFMFEQ
QRRTFSTFGYALDPSVDTSQNSSNSYIGAVDEAEKNKGLTVFEVGPKKTDKRKEVQGGEA
NDIDNYLGPWAKYVDEKDGAKPSEEEQKELDEITAKRQKKGRNKEEAPAEEKTILHVKDA
YDYQGRSYLHVPQDVGINLRTADIPDKCYLPKKQIHLWSGHTKVGCVLLFPVSGHLLLSC
SMDCKVKLWEVYNERRCIRTFIGHSKAVRDICFNNTGSQYMSAAYDRYLKLWDTETGQCI
SRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDVRTGEVVQEYDRHLGAVNAITFV
DENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILI
FGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYHRIK
AHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccctcgtttcgtactggtgcgattcagataatgagaccaaatctcatgtt
aatcctgaaaaggttgaccccgatgctctggcacatcttcaaccgttgaaatctggcaaa
acaatgtcactgactgtcctcaattcagctcctgaggtcgccgtaaaggaggctgtggag
actggcgtacatctggacccctctctcaaagaggtcacctacaaccccacatatgaaacc
atgtttgcgccagagtttggtcctgtcaacccatataaaagtcaacagatggctgcaccc
aggaatatgctgtctggctatgcagagcctgctcacgtcaacaactttatgtttgaacag
cagaggaggaccttctccacctttggctatgctctggatccgtctgtggatacaagtcaa
aactcctccaatagctacattggtgcagtggacgaggcagagaaaaataaaggattgact
gtgtttgaggttggcccaaagaagactgacaagaggaaggaggtgcaaggaggtgaagcg
aatgacattgacaattacctcgggccctgggcgaaatacgtggatgaaaaggacggcgcc
aaaccatcagaggaggaacagaaggagctggacgagatcacagccaagaggcagaagaag
ggaaggaacaaggaagaggctccggcggaggagaagaccattctccatgtcaaagatgcg
tacgactaccaggggaggtcatacctccacgtaccccaagacgtgggcatcaacctgcgt
actgcagacatcccagacaagtgttacctgcccaagaaacagatccacctctggtctgga
cacaccaaggtagggtgtgtgttgctgtttcctgtgtcaggtcacctgctgctctcctgc
tctatggactgtaaggtcaagttgtgggaggtgtataacgagaggaggtgcatacggaca
tttatcggccacagtaaagcagtgcgggatatttgcttcaacaacactgggtctcagtac
atgagtgcagcctacgaccgctacctcaaactttgggacaccgagacgggccagtgcatc
tcccgcttcaccaacagaaaggtgccatactgcgtcaagttcaacccagacgaggacaag
cagaatctgtttgtggctggcatgtctgataagaagattgttcagtgggacgtgaggaca
ggagaggtggttcaggagtatgaccgtcacctgggagcggtcaacgccatcacatttgtg
gatgagaaccgccgtttcgtcagcacgtctgacgacaagtccctccgcgtgtgggagtgg
gacattcccgtggacttcaagtacatcgcagagcccagtatgcactcgatgcctgctgta
acactctcacccaatggtaagtggctggcctgccagtccatggacaaccaaatcctgatc
tttggagcccagaaccgttttcgcctgaacaagaagaagatattcaagggccacatggtg
gctggctatgcctgccaggtggacttctccccagacatgagctatgtggtgtctggcgat
gcggatgggaagctgaatatctgggactggaagaccaccaagctgtatcaccggatcaag
gcccacgacaaggtgtgcatcagcgccctgtggcatccgcatgagacctccaaggtcatc
acctgtggctgggacggacagatcaaactctgggactag
DBGET
integrated database retrieval system
