Salmo trutta (river trout): 115174957
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Entry
115174957 CDS
T08542
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03008
Ribosome biogenesis in eukaryotes
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115174957
09123 Folding, sorting and degradation
03018 RNA degradation
115174957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115174957
03019 Messenger RNA biogenesis [BR:
stru03019
]
115174957
03009 Ribosome biogenesis [BR:
stru03009
]
115174957
03016 Transfer RNA biogenesis [BR:
stru03016
]
115174957
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115174957
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
115174957
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
RNases
115174957
Transfer RNA biogenesis [BR:
stru03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
115174957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
115174957
NCBI-ProteinID:
XP_029589893
Ensembl:
ENSSTUG00000033801
UniProt:
A0A674C043
LinkDB
All DBs
Position
35:26818785..26869444
Genome browser
AA seq
957 aa
AA seq
DB search
MGVPAFFRWLSRKYSTIVVHCTEERSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKSRIREEILGKGGYLPPVEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLSNDPGWRNITVILSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCAMCGQKGHEIKDCQGVAREKQGEHDEFADTMPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERTVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYITENGFVKLESVELIMQAIGVAEDNIFKKRKEDDEGFKRRNKD
KKKRMKAQQQGPAYMTAGQFAPQALGSRGRPGVVQNARHQAFDMRMQGRDQHNKDAAQSL
KAMMKNGGQAGSSDGQDGRGVKRKADSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATDD
DFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFELGTKPF
KPLEQLMGVFPAASGNFLPPTWRSLMSNPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALAEVYPNLSPEENKRNSLGSDMLFVGKSHPCCDFIQELYRGESHEGTEMPA
ELCHGIQGTLNLDEDPILPDRPVQSPIPMLRDIAQNTAIGVKYKDPQYRETFVFKAVILP
GAKMPEKVLKPGDWERGNRGRGNWRPQLGFNSNRQQVHLDQSAFRALGHSMNRQQQGGGQ
YSNAPPPGNYHQGNYSRPPHSGGHLPPFQHSRQQGLLGTPPPYNPQQQYPRQQYGGGGGH
GWDRSTQRGGHGGGQGQGSYRQQRGQDDRRGDRGGQPGYHSGRNYHLPPPEGKYNWN
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcattttttcgttggttgagtcggaaatattctacaattgttgtccat
tgtactgaggagaggtccaaagaatgtaatggagtacgaattcctgttgataccagcaaa
ccgaatccaaatgaagtggagtttgacaatttgtacttggacatgaatgggatcattcac
ccctgtacacatcctgaagacaaggctgcacccaaaaatgaagatgaaatgatggttgcc
atctttgaatacatggatcggctcttcaatattgtgcgacccagaagggttctctacatg
gctatagatggagtggcccctcgcgccaaaatgaaccagcagcgctccaggcgattccgt
gcttccaaggaaggagtggaactggttgaggagaaatcccgcatccgagaggagatcctc
gggaaaggagggtatcttccaccggttgaaatcaaggagagatttgacagcaactgtatc
accccaggcacagagttcatggacaaccttgcaaagtgtctccgttactacgttgcagac
agactcagtaatgaccctggatggcgtaacattacagtaatcttgtctgatgccagtgtc
cctggtgagggggagcataagatcatggactatattagacgacagagagctcaaccccac
catgaccccaacacacaccactgtctttgtggagctgacgctgacctgatcatgctgggt
cttgctactcatgagcccaatttcaccatcatcagagaagagttcaagcccaaccagcct
aggccctgtgctatgtgtggacagaaaggccatgagatcaaggactgccagggagtggcc
agggagaaacagggagagcatgatgagtttgcagacactatgccggcttctgaacaggag
ttcatattcatcaggctgtgcgttttgcgcgagtacctggagcgagagctgacaatggcc
agtctgccctttccctttgactttgagaggactgtcgacgactgggtcttcatgtgcttc
tttgttggcaatgatttcctgccacacttaccgtccttagagattagagagggtgcgata
gatagactggtgggcatctacaaagacgtcgtgcacaagactggaggctacatcacagag
aatggttttgtcaaattggagagtgttgagttgatcatgcaggccatcggcgtggctgag
gacaacatcttcaagaagcgcaaagaggacgatgagggattcaagcgaaggaataaggac
aaaaagaagagaatgaaggctcagcagcagggcccagcctacatgaccgctggtcagttc
gccccccaggcccttggcagcagaggcagacctggggttgtccagaacgcccgacaccaa
gccttcgacatgaggatgcagggcagggaccagcacaacaaggatgctgcgcaatcccta
aaagcgatgatgaagaatggtggccaggcaggaagcagtgacgggcaggatggccggggt
gtgaagcggaaagccgacagtgacagcgagccagagcctgaggataacgtcaggttgtgg
gaggacggctggaagcaaagatactacaaaactaagtttgacgttgacgcaactgatgat
gacttccgcaaaaaggtggtgaagtcctacgtggagggtctctgctgggtactccgatac
tactaccaggggtgcgcgtcctggaagtggtacttcccgttccactacgccccatttgcc
tcggacttcaaagacatcaaaggcatgttcaccgactttgagcttgggaccaagccgttc
aagcccctggaacagctgatgggtgtcttccctgccgccagtggtaacttcctgccccca
acatggcggtcactcatgagcaacccagaatcctccatcattgacttctaccctgatgac
tttgccattgacttgaatggaaagaaatacgcttggcagggtgttgcattgcttcccttc
gtggatgagcgcaggctgagggcagccttggctgaagtctacccaaacctctctccagag
gaaaacaagaggaacagccttggcagtgatatgctgtttgttgggaagtctcatccttgc
tgtgacttcatccaggaactgtaccgtggagaatctcacgagggcactgaaatgccagca
gaactatgccatggaattcaaggtacattaaatcttgacgaagaccctatcctaccagat
aggccagtgcagtctcccatccccatgctgcgggacatcgcacagaacactgccattgga
gtgaaatataaggacccacagtacagagaaacctttgtgttcaaggctgtcattcttcct
ggggctaagatgcctgagaaggttctgaagcctggggactgggagagagggaaccgtggc
aggggtaactggaggccccaactgggtttcaactccaacaggcagcaggtccaccttgac
cagtcagccttcagggccctgggtcacagcatgaacagacagcagcagggaggtgggcag
tacagcaacgctccgccccctggcaactaccaccaggggaactacagcaggcccccccac
agcggcggtcacctcccacccttccaacattctaggcagcagggtcttctagggacacct
cccccatacaaccctcagcagcaatatccaaggcagcagtatggtggtggtggtgggcat
ggctgggaccggtcgacgcagagaggaggccacggaggggggcagggccagggcagctac
cgtcagcagcgtggtcaggacgaccgcagaggagaccgtggaggacaaccgggataccac
tctggacggaattaccacttgccacccccagaaggaaaatacaattggaattaa
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