Salmo trutta (river trout): 115175748
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Entry
115175748 CDS
T08542
Name
(RefSeq) collagen alpha-1(XXII) chain-like isoform X1
KO
K16630
collagen type XXII alpha
Organism
stru
Salmo trutta (river trout)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
115175748
NCBI-ProteinID:
XP_029591078
LinkDB
All DBs
Position
36:26642603..26713613
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AA seq
1624 aa
AA seq
DB search
MELRLGCRASLVLVILALTLSGLRVDAQSRAGCKNVHYDLVFILDTSSSVGKENFEKIRQ
WVSNLVESFDVGPDKTRVAVVRYSDRPTTEFNLGRYSTMDEVKRAARNIRYLGGNTMTGD
AISYTTTNIFTERAGARPAARGIQKVAILLTDGRSQDYVLEPSKAAAKAGVRMFAVGIGE
ALKVELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTS
YGLEEVPGFDLMEYFKVENILGPRFDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNEEVD
NLFDRNWHKIALSVEAKAVSLYLDCKLIQTLPIGDREDIDIHGKTVIGKRLYDSVPIDFD
LQRMMIYCDSKHAELETCCDLPTGPCPKMVVTEAPPIEIPTPTPASDEQQRGPQAVNCSC
PAGERGEIGVPGVAGPKGEKGDTGDLGAVGPSGLKGAKGETGKVISVKGDRGEKGDPGRR
GTSGDEGSKGEKGTSGAAGLAGKDGSKGERGESGLAGDQGLPGPLGPKGIQGDSGLPGSS
GLKGVGGEKGLKGDKGSAGLRGDKGIDGFPGKPGVPGKDGLGGLTGAPGAAGVKGEKGEM
GPAGMPGDMVQSEGLKGVDGPPGPRGPPGPDGPPGPPGAPGQLGLPGEPGEFGQRGRKGE
SGLPGVDGLPGPPGPQGPPGGQGNPGQTGPPGLPGEIGFSGKPGEPGKAGLPGNDGLDGV
PGNDGDKGPRGESGLDGFPGKPGPKGEEGPPGPRGPGGESGPVGLTGQPGVVGPRGEKGG
QGDRGQDGSLGPKGDKGDKGDTGPKGTPGIPGNVANVIPEPGEPGNPGARGEKGEQGNPG
EIGQRGLPGEPGFKGLAGPQGPKGDIGPKGETGRQGDPGPPGLQGTQGTRGLPGNVGIPG
TLGPPGIAGQRGERGELGKEGRAGPPGPPGDAGIQGPPGLPGKGKDGQNGDPGQRGIEGP
PGQKGQIGSQGLQGVPGDRGPPGEGKAGPPGPSGPNGAVGSPGMRGLPGVAGTQGPAGHH
GLPGRPGEKGSPGEPGAAADLSDLNLKDVCSDCPAGPPGQPGLPGTPGDKGPAGPPGKNG
QDGYQGQVGPTGPTGLPGANGEKGVKGDRGPQGGPGDKGEKGHTGPPGHPGTAGIMGNPG
NDGQPGPIGPPGAPGEKGKEGMKGIQGPPGLPGLMGQMGKIGKDGRPGEQGEPGKQGETG
PPGPPGLRGMPGFKGHRGEPGQPGSKGEDGKEGRNGPEGKPGQDGNTGPPGPEGLAGRRG
ENGKPGEPGPSGKPGAPGTPGQAGAKGDPGNPGLPGFSGPKGPSGPAGPVGPEGKQGMSG
RAGERGVKGERGDSGGKGDKGPVGDPGMPGNQGLPGRKGHTGMMGMSGPPGEVGLTGPQG
TPGNPGQPGPRGESPSLETMRRLIQEELAKALDAKMAYLMAQLQPAHVKSTAGRPGPPGP
SGKEGSNGRPGPPGEPGMPGQNGGDGMRGPMGPKGERGSRGDKGENGVGQRGETGPSGPI
GPAGMPGYGKDGQPGAAGAQGEPGNPGPHGQAGPSGPPGQCDPSQCAYYASLGARPHTKN
VKGN
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgactgggatgcagggcttccctggtcctggtcatactggccctgacgctc
tcaggactgagggttgatgctcagagcagggcaggctgtaagaacgtgcattatgacctg
gtgttcatcctggacacgtcatccagtgtggggaaggagaactttgagaagatccgccag
tgggtctccaacctggtggagtcgttcgacgtgggcccggacaagacgcgtgtggcagtg
gtacgctacagtgaccggcccaccacagagttcaacctgggacggtacagcaccatggac
gaggtgaagagggccgccaggaacatccgctacctgggagggaacaccatgaccggggac
gccatcagctacaccaccaccaacatcttcacagagcgggccggggcccggcctgccgcc
aggggcatccagaaggtggctatcctcctgacggacgggaggagccaggattacgtgttg
gagccttccaaggcagcggcgaaggccggggtgaggatgttcgcagtgggcatcggggag
gctctgaaggtggagctggaagagatcgctgcggaacctaagaacgctcacgtgttccat
gtgacagacttcaacgccatcgacaagatcagagggcggctgaggagacggctctgtgaa
aacgtgctgtgccccaatatgaaggtccaaccagaccgcttcaagcccaacagtaccagc
tatggattggaggaagttccagggttcgacctgatggaatacttcaaggtggaaaacata
ctgggaccaaggtttgatgagggccagagctcctacgttcgacttgggaccatgcctatt
gtacaacagacagaagacgtgttccctcaaggtctgccagatgaatatgcttttgtgaca
actttcaagttcaggaagacctcgagacgagaggactggtacctctggcagatctttgac
aagtatggaattccacaggtgtctatccgtctggacggtgagaacaaggcagtggaatac
aacgcagtggggctgaccaaagacgcagtgagagctgtgttcaagaatgaggaggtggac
aacctgttcgacaggaactggcacaagatcgccctgagcgtcgaggccaaggcggtgtct
ctgtacctggactgtaaactcatccagaccctgcccatcggggacagggaggacattgat
atccacgggaagactgtgatcgggaagaggctgtacgacagcgtgcccattgattttgac
ctccagaggatgatgatctactgtgactccaaacacgctgagctggagacctgctgcgat
ctgcccaccgggccgtgccccaagatggtggtgacggaggcccctcccatagagattccc
acccccacccctgcaagcgatgagcagcagagaggaccccaggcggtcaactgctcatgt
cccgctggagagaggggagagatcggtgtacctggcgttgccgggcccaagggtgaaaag
ggtgatactggtgatctgggagcggttggaccttctggcctcaagggagccaaaggagaa
actggcaaagtaatatctgtcaagggagacagaggtgagaagggtgaccccgggagacgg
gggacatccggcgatgaaggatccaaaggggagaagggaaccagtggagctgcgggtctt
gctgggaaagatggatctaaaggagaaagaggtgaatcagggctggcaggcgatcaggga
ttacctggacctctgggaccaaagggaattcaaggagactcaggacttcctggttcatct
ggactcaaaggtgtcggtggtgaaaaaggtttgaaaggagataaaggatcagcaggatta
aggggtgacaaaggtattgacggattccctggaaaacctggtgttcctggaaaagatggt
ttgggaggactgactggtgcacctggagccgctggagtgaaaggggaaaagggagagatg
ggccctgctggaatgcctggggatatggttcaaagcgagggcttgaaaggagtggatgga
cctccaggacctcgtggccctccagggcctgacggcccaccaggaccccctggtgcacct
ggtcaacttggtttacctggcgaacctggagagtttggccaaaggggcaggaaaggtgaa
agtggattacctggtgttgatgggctacccggacctcctggtccccaggggcctcctgga
gggcaaggaaaccctggacaaactggacctcctggtctacctggtgagattggattttca
gggaaaccaggagagcctggcaaagctggtttacctggaaacgatgggctggacggagtt
ccaggaaatgacggagacaaggggcctagaggagagtctggattggatggcttccctggt
aaacctggtcctaagggtgaagaaggaccacctgggccaagaggacctggaggagagagt
ggaccagttggtttaactggacaaccaggggtcgttggaccaagaggagagaaaggagga
cagggtgacagaggacaagatggctctctcgggccaaagggtgacaaaggtgacaagggt
gacacaggacccaagggaactccaggaataccaggaaatgtggccaatgttatccctgag
cctggtgagcctggaaatcctggagcgagaggagaaaagggagagcaggggaatccagga
gagattggtcaacgaggactgcctggtgaaccaggctttaaaggactggctggaccacag
ggccctaaaggagacattggccctaaaggagagactgggagacaaggagaccctggtcct
ccaggattgcagggtacgcagggtacccgtggactgcctggcaatgtgggcatccctgga
acccttggaccacctggaatagctggacagagaggagagaggggagagttggggaaggag
ggtcgtgctggccccccaggccctcctggagatgcaggcatacaaggaccccctggccta
ccagggaagggcaaagacggacagaacggtgaccctggacagcggggaattgaaggacct
cccggacagaagggccaaatcgggtcccagggacttcaaggggttccaggggacaggggt
cctccaggagaaggcaaagccggacccccgggaccttcagggcccaatggtgcagttgga
tcaccgggcatgaggggtctgccaggcgtcgcaggtacacagggacctgcaggacaccat
ggtttaccaggacgaccaggagagaagggatccccaggagagccaggagcagcagcagac
ttgtcagatttgaatctgaaggacgtgtgttcagactgcccggccggacccccgggacag
cctggtctcccagggacaccaggagacaagggacccgctggacccccagggaagaacgga
caggacgggtaccaaggccaagtaggcccgaccggacccactggactcccaggagccaac
ggagagaagggtgtgaaaggtgatagaggaccccaaggaggacctggagacaaaggtgaa
aagggtcacaccggaccccctggccaccctggtactgctggcatcatggggaatcctggt
aacgacggtcaacccggccccatcggtcccccaggagcccctggagaaaaaggcaaggag
gggatgaagggaatccaggggccaccaggtctcccaggcttaatgggtcaaatgggtaaa
attggcaaagatggccgaccaggagaacaaggagaacctggtaaacaaggagagacagga
ccaccaggaccaccaggtctcaggggaatgcctggcttcaagggtcacagaggagagcct
ggacaaccaggttcaaagggtgaagatggaaaggaaggacgtaacggaccggagggtaaa
cctggccaagacggtaatactggaccacctggaccagaaggcctggctggccggagaggg
gagaatggtaaacctggtgaaccaggaccttcaggaaagccaggagcccctggtactcca
ggtcaggctggagccaagggagaccctgggaacccaggattaccaggctttagtggtccc
aagggaccgtcgggtcctgctggtccggtcggcccagaggggaaacagggtatgtctggc
agagcaggagaacgtggagtcaaaggagagaggggcgactcaggtgggaagggagataag
ggacctgttggagatccaggtatgcctggtaaccaggggctcccaggtcgtaagggccac
acagggatgatgggtatgtccgggcccccaggagaggtgggtcttaccggccctcaggga
acacctggaaaccccggacaaccaggaccacggggagagtcaccatcactggaaacaatg
agaaggctgatccaggaggaactagctaaagcgttagatgccaaaatggcgtacctgatg
gcccagctccagccggcccatgtgaagagcacggcaggtcggccaggacctccaggcccc
tcggggaaagaagggagcaacggtcgccccggaccaccaggggagcctggcatgcctggg
cagaacggaggagacggcatgaggggacccatgggtcctaaaggtgagagaggatccaga
ggagacaagggagaaaacggagttggacagagaggagagactggaccatcaggtcctata
ggaccagcaggtatgccaggctatggtaaggacgggcagcccggggcggctggagctcag
ggagaaccagggaatcctggtccccatggccaggcaggccccagtggacccccagggcag
tgtgacccctcccagtgtgcttactatgccagcctgggagcacgaccccacaccaagaac
gtcaaggggaattaa
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integrated database retrieval system
