Salmo trutta (river trout): 115175787
Help
Entry
115175787 CDS
T08542
Name
(RefSeq) thrombospondin-3b-like isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
stru
Salmo trutta (river trout)
Pathway
stru04145
Phagosome
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115175787
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115175787
09144 Cellular community - eukaryotes
04510 Focal adhesion
115175787
09142 Cell motility
04820 Cytoskeleton in muscle cells
115175787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115175787
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115175787
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115175787
Membrane trafficking [BR:
stru04131
]
Endocytosis
Phagocytosis
Opsonins
115175787
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115175787
Exosomal proteins of colorectal cancer cells
115175787
Exosomal proteins of bladder cancer cells
115175787
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115175787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
115175787
NCBI-ProteinID:
XP_029591166
Ensembl:
ENSSTUG00000031803
LinkDB
All DBs
Position
36:complement(28704494..28737589)
Genome browser
AA seq
960 aa
AA seq
DB search
MDMVRFVLSLLLASAAVLLSLTRASEMQVIDMLELHDARQIASAVGKMSGALGFVSDFYL
VSTVRLPPKLGGVLLGVYNKGDNRKYLEVALMGKINKVLVRYVRENGKLHTVNLQNPGLS
DGRIQSLILRVGGLQQNHLHMELYVNCRLADSAQVLPSMVQLPAEAESVEIRNGRKAYAR
LQGSVDSLKLALGGSIAKAGILTTCPFQGDTHFQNSVSADVNAILGDHTKALIGQLIIFN
QILGELREDIREQVKEMSLIRNTILECQVCGFYETHSRCEPNPCYKGLACTETWEYPGYR
CGACPDGMTGNGTHCQDIDECALARPCFSPEGCVNTAKGFTCEPCPVGFSGPLLSGLGVE
FAKSHKQKCIDVDECADLSKSCVPNSVCINTEGSFRCGPCKESFVGNQTVGCFLRRSCAT
LGFNPCDVNAHCVIKGAASVSCECNVGWAGNGHTCGPDTDIDGYPDQPLPCIDNDYHCRA
DNCVNTPNSGQEDTDGDGIGDQCDEDADGDGIRNVEAVKSKDNCRLVPNKDQQNSDTDSY
GDTCDNCPNVPNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDRVG
DACDSCPEVNDPMQSDIDNDLVGDVCDNNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGI
GNECDDDDDNDGIPDARPPGPDNCRLIPNPSQTDTDGNGVGDMCENDFDNDSVIDLVDVC
PESAEVTMTDFRNYQTVILNPEDDAQIEPKWIVLNRGMEIVQTMNSDPGLAIGYTAFNGV
DFEGTFHINTATDDDYVGFIFGYQDSSSFYVVMWKQTEQTYWQSLPFRAMAQPGLQLKAV
KSHTGPGEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQVGYIKVRLY
EGMTLVADSGVLVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYHKLIHIRV
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggatatggtgaggtttgtgctaagtttgctgcttgcgagcgcggctgttctcttgagc
ttgaccagggcttcagaaatgcaagtgattgacatgctggagctgcatgatgccaggcag
attgcgtccgcggtggggaagatgtcgggggctctgggcttcgtgtcagacttttacctg
gtgtcaactgttcgtctgccgcccaaactgggaggagtgttgttgggagtctacaacaaa
ggcgacaacaggaagtacctggaggtggccctcatgggcaagatcaacaaagttctggtg
cgctacgtacgcgagaatggtaaactccacacagtgaacctccagaaccccggcctctcc
gatggacgcatccagtcactcatcctccgtgtgggtgggctccaacaaaaccacctccac
atggaactctatgtcaactgccgattggctgactcagcacaggtcctgccgtccatggtc
cagctcccagctgaggcagagtctgtggagatacgcaacgggcggaaggcctatgccagg
ctacagggctcagtggactctttgaaactggctttgggtggctccatagccaaagcagga
atccttaccacctgtccgtttcagggagatacacattttcagaattcagttagcgccgat
gtcaatgccattctgggtgaccacaccaaggctttgattggccagctgatcatcttcaac
cagattcttggcgaactccgagaggacatcagggaacaggtaaaggagatgtctctgatt
aggaacactatcctggagtgccaagtatgtggcttctacgagacccactcccgctgcgag
cccaacccctgctataagggcttggcctgtacagagacctgggagtacccagggtaccgt
tgtggtgcctgcccagacggcatgacggggaatggcacccactgccaggacattgacgag
tgtgctctagcccggccctgtttctcgcccgaggggtgcgtaaacacggcaaagggcttc
acctgtgaaccatgtcccgtcggcttctcaggacccctccttagcgggcttggggtggag
tttgccaagagccacaagcagaagtgcatagatgtggatgagtgtgctgacctctccaag
tcctgcgtgcccaactctgtctgcatcaacacagagggctcgttcaggtgtggtccatgt
aaggagagcttcgtaggcaaccagacggtgggctgtttcctgcggaggtcctgcgccacg
ctgggcttcaacccctgtgacgtcaacgcccactgtgtcataaagggtgctgccagcgtc
tcctgcgagtgtaatgtgggctgggcaggtaatgggcatacatgtggtccagacacagac
atcgatggctaccccgaccagcctctcccctgcatagacaatgactatcactgccgagcc
gacaactgtgtgaacacgcccaactctggccaggaggacacagacggagacggtataggt
gaccagtgtgatgaagatgcggacggagacggcatcaggaacgtggaggccgtcaaatca
aaggacaactgccgtctggtccccaacaaggatcaacagaactcggacacagactcatat
ggggacacgtgtgacaactgccccaacgttcccaatggaagccagaaggacacagatgga
aacggggctggggacacctgtgacaatgacattgatggggatggtatcccaaacgtgctg
gacaactgtcccaaggtgcccaaccctatgcagactgaccgggatggggatcgagtgggg
gacgcctgtgacagctgcccggaagtcaacgaccccatgcagtctgatatagacaacgac
ctggtgggagatgtgtgtgacaacaaccaggacatggatggggacggccaccaggattca
agggacaactgtccagacgtccctaacagctcccagctggactcagacaatgacggcatc
ggcaacgaatgcgacgatgacgacgacaacgatggcattccagatgcgagacctcccggg
ccggataactgtcgtctcatccctaaccccagccaaacagacactgatggaaatggcgtt
ggtgacatgtgcgagaatgactttgacaacgactccgtgatagacttggttgacgtgtgt
ccagagagcgctgaagtcacaatgaccgacttcagaaactatcagacggtcatcctgaac
ccggaggatgatgcccaaatcgaacccaagtggattgtactcaatcggggtatggaaatt
gttcaaaccatgaacagtgaccctggtttggccataggctacacagcctttaacggggta
gactttgaagggacgttccacatcaacacggccacagacgatgactacgtgggcttcatt
tttggttaccaggactcgtccagcttctacgtggtcatgtggaaacagacggagcagacc
tactggcagtcgctgccttttagggccatggctcagccaggcctgcaactaaaggcagtg
aagtcacatacgggtccaggcgagtacctccggaacgccctgtggcacacgggcgacacc
ccgggcgaggtcaccctgctgtggaaggacccccggaatgtggggtggagggacaagaca
tcctaccgctggcacctcagccaccgcccgcaggtgggctacatcaaagtgagactgtat
gaaggcatgacattggtggcagactcgggcgtactggtggatacctcaatgaggggcggg
aggctgggcgtcttctgcttctcccaggagcaaatcatctggtccaacctgggctatcgc
tgcaacgatactgtaccagaggactatgagttctaccacaagctgatccacatcagggtg
tga
DBGET
integrated database retrieval system
