Salmo trutta (river trout): 115175883
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Entry
115175883 CDS
T08542
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stru00535
]
115175883
Proteoglycans [BR:
stru00535
]
Extracellular matrix (ECM) proteoglycans
Others
115175883
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4992
VWA_3
DUF4959
Motif
Other DBs
NCBI-GeneID:
115175883
NCBI-ProteinID:
XP_029591350
Ensembl:
ENSSTUG00000028435
LinkDB
All DBs
Position
36:31925596..32027327
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AA seq
1884 aa
AA seq
DB search
MQAIGLKTWVWSPLLCLVLISLLPVQAQGQVATPRRLRFKVLSATQLHVSWKEPKGDFES
YRFIYSTQSDAEETELEVTKKEAKVIIDFDPRKLYTVKVTAVKGAQESKPLQGTFKKPDN
ENVQPQNVRPKNQKDTSVTEENNDISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGL
ALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVKPPAKRLREAGIELFAIGVKNADE
KELKAIGSPPEETHVYNVADFSVMTSIVEGLTRTVCDRVEQLDKAIKGDRGPEVTMASPR
DLVTSEVTARSFRVSWTHAPGTVEKYRVVYHPASGGQPEEKVVQGTVDTVVLNYLLSLTE
YQVAVFAIYASSASEALRGSTTTLALPMVNNLELFDITHNTMRARWRVAEGASGYMILYA
PLTEGDDADDEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLT
PARNLRFSNVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRISTLLLRNLTSL
TEYTVAIFAIYDEGQAEPLTDSFTTKRVPEPLNLRSSEVSTESFKVTWEHSAQDVVLYRL
TWTPIRGGDTKKMLVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEESNAVTLTESTVART
TTTTKATTTTTTTKATTTAVVRLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYVTAR
GDRAEETKMVPGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMGRTLPLSAPRNLR
VSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGTEYG
VRVIASYTTGSSETLTGKARTLYLGVANLNTYQVRMTSVCAQWGAHRHATLYRVVIESLL
NGYKQEARLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEKTFPVPTPAPTRP
PTTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLYSTTGALDIIGPDGT
QVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVGGGI
RRGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSERHVF
FVDDLDAFKKIEEKLVTFVCEAATATCPSLAMSGSTLPGFRMMEMFGLVEGMYGHLSGVS
MEPGTFNSFPCFRLHNNSLLTQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFALWEILN
KDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHVAISKTSAK
AVIDCKLVGEKDITAAGNITTDGLEVLGRMVRSRGKKDSSAPFQLQSFDIVCSTSWASRD
KCCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGERGEPGAVGPIGP
VGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGVPGIQGIPGSPGSPGRLGQT
GTRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPAGNKGEKGERGDL
QSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGEPGRQGGPGPQGE
QGPPGRPGFPGSNGENGQPGARGLSGEKGDKGSPGAGVQGPRGPVGPPGPTGQGRTGSQG
PSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCMGYNVGEGGIGGDTSDRHNLPLVQLP
PNTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPALTQGDEVLRSPGIHRS
YRSLADKNDKKEEEGPGERKMVVP
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagacgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagtgcaacccagctgcatgtgtcatggaaagaaccgaaaggagactttgaaagc
tacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtgacaaaa
aaggaagccaaagtgatcattgactttgaccccagaaagttgtatacagtcaaggtcact
gctgtgaaaggtgctcaggagagcaagccacttcaaggaacatttaagaagcctgacaat
gagaacgtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcactgag
gagaacaatgacatatctgaagagcagttcatgtgtaagaccccggccatagcggatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtctggtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gcccagtacagtggtgaccccaggattgagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacctgccctacaaaggggggaacacactgacgggtctt
gcattgacgtacatcctggagaacagttataaacctgagtccggatccagggccggcgtt
ccaaaaattggaatcctgatcacagatgggaagtctcaagatgatgtcaaacccccggct
aagaggctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgag
aaagagctgaaggccatcggctcgcctccagaggagacgcatgtctacaacgtggccgac
ttcagcgtcatgacctctatcgtggagggtctgaccaggaccgtctgcgaccgggtcgaa
cagctcgacaaggccatcaaaggcgacagaggcccagaagtcaccatggcctctcccaga
gacctggtgacctcagaggtgacagccaggagtttccgggtgtcgtggacccacgcccca
gggacggtggagaagtaccgggtggtgtaccaccctgccagcgggggccagcccgaggag
aaggtggtgcagggcacagtggacacggtggtgctcaactacctcctctccctgactgag
taccaggtggccgtgttcgccatctacgccagctcagctagcgaggccctccgaggcagc
accaccacattggccctgcccatggtgaacaacctggagctgtttgacatcacccacaac
accatgagggctcgctggagggttgcagagggggcttctggctacatgatcctctatgcc
ccgctgaccgagggagacgacgccgacgatgagaaggaggtgaaagtggctgagacggtg
aacgaagtggaactggagaacctaaccccagacacagagtacacagtgaccgtatacgcc
atgtacggagaggaggccagtgaccctatgaccagtcaggagaccacgctacccctgacc
ccggcgcggaacctgcgcttctccaacgtcgaccacagctcggccagactcacctgggag
gcgacgtccaagaaggccaacggttaccgcatcatgtatgtcaagaccaatggagtgcag
accaatgagatggacgttggccgcatcagcaccctgttgctaaggaacctgacgtcattg
accgagtacacggtggccatctttgctatctatgacgagggccaggcagagcccttgact
gacagcttcaccactaaaagggtcccggagcctctgaacctgaggagcagtgaagtctcc
acagagagcttcaaggtcacctgggaacactcagcccaagacgtggtcctttacagactc
acatggacccccatcagaggaggagacactaaaaagatgctagtgaatggtaaaatgaat
agccacctgctgactggactgaggcccatcactgagtacgaggtctctctgattgccgtc
ttcagaaacgaggaagaaagcaacgccgtgaccctcacagagtcaacagtggcaagaaca
acgactaccacaaaagctactactaccacaactaccacaaaagctaccaccacagcagtt
gtgcgtctgggtgtgaggaacctcctgctcagcgatcacaccaccttcagcatggaggtg
tcctgggagctgcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtcaccgccagg
ggagatcgtgccgaggagacgaaaatggtcccaggtggtcagaacagcctcctgctgcag
ccactgctgtctgacatggagtacaaggtgacggtcaccccggtctacgccgacggagac
ggccccggtgtcagccgcatgggacgcaccttgccactgtctgctcctaggaacctgaga
gtgtcggaggaatggtacaaccgcttccgtatcacctgggacacgcccccatcccccact
atgggctatagggtcgtctacaaacccatctctgctccgggacctgctttggagaccttt
gtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtactgagtacggc
gtcagggtcatcgcctcctacactaccggctccagcgagaccctcaccggcaaggccagg
acattgtaccttggagtggccaatctgaacacctaccaggtgaggatgaccagcgtgtgt
gcccagtggggtgcccaccgccatgccactctgtaccgtgtggtcatcgagtcgctgctc
aatggatataagcaggaggcaaggctgggaggaggaaccacccggcactgcttcaatgac
ctgacagctaacacgcagtacaagatcagtgtgtacgcccaactccaggacacagaggga
cctgcagtctccaccacagagaagaccttccctgttcccaccccggcacccaccagacca
cccactacaaccgctcctcccagtataccctcagtcaaggaagtttgcaaggcggccaag
gcagacctggcattcctagtggacggctcctggagcattggggatgacaacttcctgaaa
atcatccgcttcctgtacagcaccacaggagcccttgacatcattggaccagatggcact
caggtggccattgtccagttcagtgacgatgccagaaccgagttcaaactcaactcgtat
gacaacaaggagaggctgctggaggccattaaccgaatctcctataagggagggaacacc
aagacagggctagccatccggcatgtgaaagacaccatcttcacagtgggaggaggtatc
cggaggggcatccccaaagtactggtggtgttgactgacgggcgctctcaggacgatgtc
aacaaggtctccaaagagatgcagatggaagggtacattgtttttgccattggttttgcg
gatgcggactacggggagctggtgagcatcgccagcaagcccagcgagagacacgttttc
tttgtggatgatttagacgccttcaagaaaattgaggaaaagctggtcacttttgtttgt
gaggctgccactgccacttgtccttcgttggcgatgagtggcagtaccttgccaggtttc
aggatgatggagatgtttggcctggtggagggtatgtatggacatttatcaggagtgtcc
atggagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaactccctcctc
acccagcccaccaagtttatccaccccgagggtttgccctccgattacaccatcacaatg
ctgttccgcctgctgcctgaaacgcccaaggagccctttgcattgtgggagatcctcaac
aaggacaacgagcccctggtgggcgtcatcctggacaacggtggcaagaccctcaccttc
ttcaaccatgactacaaaggacagtttcagactgtgaccttcgagggacctgagatcaag
aagctcttctacggcagtttccacaagctgcacgtggctattagcaagaccagcgccaaa
gctgtcatcgactgtaagctagtgggggagaaggacatcaccgcggcgggcaacatcacc
acggatggcctggaggtgctgggacgcatggtgcgctccagggggaagaaggacagctct
gcaccgtttcaactgcagtcctttgacatcgtctgcagcacgtcctgggccagccgagac
aagtgctgtgagcttcctggtttgaggaaggaggaggactgtcctgccatgccccgtgcc
tgcacctgcagccaggaaagcaaaggtccccctggccccactggaccccctggaggacct
gggatcagaggagggagaggggagcgtggagaaccaggagctgtggggccgataggtcca
gttggggatgccggtactcctgggctgcagggccctcctggaccccaggggcccagcgga
cgtaccatcatgggccctccgggtggtccaggagaaagaggtgagaagggtgcagctggc
gttccaggaatacagggcattcctggatctcctgggtcaccaggtcgattgggacaaaca
ggaacaaggggacttcctggtaaagatggaccccaggggcgaacaggacctccagggacg
ataggcactccaggagctcctgggtcaccagggtcaagtggacctccagggtcactggga
aaccagggacctcctggtcctgccggaaacaaaggagagaagggagaaagaggtgacctg
caatcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcagctgatacagagt
cacatggctcgctacagctccatccttaaccacatccccagcgcacccgtctccgtccgc
accgttccaggtcccccaggagagcccgggcggcagggcggcccaggaccacagggagag
caggggcccccgggcagaccagggttccccgggtccaacggagaaaatggacaaccagga
gccagaggtttgtcaggagagaagggcgacaagggaagcccaggcgcaggagtccagggt
cccagaggccctgttggacccccaggaccaacgggtcagggccggacaggtagccagggt
ccatctggtcggccggggaaccctggaacccctgggcggccgggtatccctggaccagtg
gggtcggctggacctcctggatactgtgaccagaactcctgtatgggctacaacgtagga
gagggtggcattggtggtgacacatctgaccgccacaatcttcccttagtccaattgccc
cccaacacctaccagaactatgacgaggtggaggaggaggacccctataggtatggcgag
gggggctacccctccgagtactatcagcccaactacccggcgcctcgaccggtcgtgccc
gaggacccagccctcacccagggcgacgaggtgctgaggtcccccgggatccaccgctcc
tacaggagcctggctgacaagaatgataagaaagaagaagaggggccaggggagaggaag
atggtcgtcccatga
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