Salmo trutta (river trout): 115176101
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Entry
115176101 CDS
T08542
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115176101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115176101
03036 Chromosome and associated proteins [BR:
stru03036
]
115176101
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115176101
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115176101
mRNA degradation factors
5'-3' decay
Decapping complex
115176101
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115176101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
115176101
NCBI-ProteinID:
XP_029591774
Ensembl:
ENSSTUG00000035131
UniProt:
A0A674CBV3
LinkDB
All DBs
Position
36:complement(40487724..40529944)
Genome browser
AA seq
487 aa
AA seq
DB search
MASARTENLGPIGMGLNKQLRGVPKPASPQSGPLVLGSLLSKAVGAPQKAGAALEGTGIR
FGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLGKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHATNPNCEEELKET
GRQQVEP
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcaagaacggagaaccttggccctatcggcatgggactgaacaagcagctt
aggggggtgcctaaaccagcctctcctcaatcaggacccctcgtcctgggctctctgtta
agcaaggctgtaggtgcaccccagaaagcaggtgctgccctggagggaactggcattagg
tttggagatgactggaaaaagagcctacagctccctcccaaagacactagagtcagaacc
tctgatgtaacatccactaagggaaatgagtttgaggactactgtctgaaacgggagctc
ctgatgggcatctttgagatgggctgggagaagccctcccctatccaggaggagagcatt
cccatagccctgtcaggacgagacatcctggcccgagccaagaatggaacagggaagagt
ggggcctacctcatccccatgctggagagaatagacctgaagaaggactatatacaggct
attgtgatggtgccaactcgtgagctggccctgcaggtgagccagatcagtatccagatc
agcaagcacctgggcggagtgaaagtcatggccaccacgggtggcaccaacctgcgagat
gacatcatgcgcctggatgagactgtgcatgtggttatagccacacctggcaggatcttg
gacttgataaagaagggcgtggccaaagtggatagagttcagatgatggtgatggatgag
gcggacaagctgctgtctcaggactttgtggtgctcatcgaggatatcatcagcttcctg
ggcaagggccgtcagatcctgctgtactctgccaccttccccatcagcgtgcagaagttc
atggccaagcacctgcagaagccctatgagatcaacctgatggaggagctgactctgaag
ggcatcacccagtactacgcctacgtcactgagagacaaaaggtccactgtctcaacaca
ctcttctccaggttgcagatcaatcagtccatcatcttctgtaactccacccagagagtt
gagctgctggctaagaagatcacccagctgggatactcctgcttctacatccacgccaag
atgatgcaggagtacagaaatcgtgtgttccatgacttcagaaatggactctgcagaaat
cttgtctgcactgatctcttcaccagaggtattgacatccaggccgtcaatgtcgtcatc
aacttcgacttccccaagaatgctgagacatacctgcatcgcatcggacgatcagggagg
tttggccacctgggcctggccatcaacctgatcacctctgaagaccgcttcaatttgaag
tccatcgaggaccagttggtcaccgacatcaagcctatccctggcagcatcgacaagagc
ctgtacgtggcagaattccacgccaccaatcccaattgcgaggaggagctgaaggagaca
ggccgccaacaggtggagccctag
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