Salmo trutta (river trout): 115176161
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Entry
115176161 CDS
T08542
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115176161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115176161
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115176161
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115176161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
115176161
NCBI-ProteinID:
XP_029591854
Ensembl:
ENSSTUG00000029299
UniProt:
A0A674B833
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All DBs
Position
36:complement(34335041..34352044)
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AA seq
951 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKCFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSPATYTTENSED
DKKRGRSTDSEVGQLCCTRSGFEVMPFITFQSPVKNGNPSSSLSSSSSSSSSSSSASSGA
SSSSLATIAGGCLPVTGGNSLLGNMGGLLSNSGSYRDATQQQQLQQHYQTQQARNSVISS
NTPSNSNPSNNILLPSPSASSPANSSTTLPPLTPNTQLHAPSRPSPSSSLGLGLGLGLGK
GGITGSPAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSGCS
SSPNSSTVGPVGGNTVGDRSTGLLGSAPGASGVSGGILSLSGLGSGQLAVQGPPLVAPSP
IGGLAPGSSLGAIGSIGGNSGSGAPSSSVGMGGGSMSITRPPSGQKQNGSTSYSAVVADS
TPDSALNSASQLQSSQPSSLTSTTNQPKDSGPSLLGPMTLPTSSPSPSYSESKLPGSGML
NGPLSYTQTSESKPQEPLSTLKSMAERAALGSGMEGEMLSLHLTTDIFPSTTLPPGPPSA
PQQPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNP
CPTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKY
MMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcgtactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggaaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagtgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgcctggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacacctacctccacc
acgtcctcctcgcccatccctccctcgcccgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagctgtgctgcaccaggagt
ggttttgaagtaatgccttttataacatttcagtcgcctgtcaagaacggcaacccctct
tcgtcgttgtcctcctcctcctcttcatcctcctcttcatcctctgcctcctcgggtgcc
tcctcatcctcgctggcgaccatcgccgggggttgcctgcctgtcactgggggcaacagc
ctcctgggcaacatggggggtctcctctccaactctggcagctacagagacgctacccag
cagcagcaactgcagcagcattaccaaacccagcaggccagaaactcagtcatctcctcc
aacaccccctccaactccaacccgtcgaacaacatcctcctccccagcccctctgcttcc
tcacccgccaactcgagcacgaccctccccccactcacgcccaacacccagttgcatgct
ccgtcaaggccttcaccgtcctccagcttggggcttgggttgggcttgggccttggtaaa
ggcggcattacggggtcaccggccgtcagccagatgtcgggccttggcttgtcggggatg
ccggcatccctaaacaccatggccgggctcctggcgggctcaacttcggccccttacgcc
acggcagcagcaggctccggaaccatcggaagccccctagcagggaaaagcggctgcagt
agcagccctaactccagcacagtgggaccggtgggcgggaacactgttggcgacagatcc
acgggcctgttgggatctgcacccggtgcaagtggtgtcagcggtgggatcctcagccta
agcggccttggctcagggcagttggcggtccagggccctcccctggtggcccccagtccc
ataggaggcctggcccctggaagcagcctgggagccataggaagcattggagggaactct
ggttcaggcgcgccaagcagtagcgtgggcatgggaggaggaagcatgtcgatcacaagg
ccacccagtggacagaagcagaatggtagcactagttacagtgctgtagtagcagacagc
acacccgattccgccctcaacagtgccagccaattacaaagcagccaaccctcgtctttg
acctccaccaccaatcagcctaaagacagtggccccagcctcttagggcccatgactctt
cccaccagctctccctcgccctcctacagcgagagtaaacttccaggcagcggtatgctc
aacgggccactctcctacacacagacctctgaaagcaagccccaggagcctctgagcact
ctaaagtctatggcagaacgagcggcactgggctcaggaatggagggagagatgctctct
ctgcacctcaccacagacattttccccagcactacattgcccccggggcctccctcggcc
ccccagcagccctcgctttcagaggtcagcatccccccatcgctgggcgtgtgcccactc
gggcctgtgcccctgtccaaagaccagctgtaccagcaggccatgcaggagtcggcatgg
acgcacatgccccacccctccgactcggagaggatcaggcagtacctgatgaggaacccg
tgtcccaccctgcctttccaccaccaggtgccaccgccccactccgactctgtagagttc
taccagagactgtccacggagacactgttcttcatcttctactacctagagggcactaag
gcccagtatctggcagccaaggccttgaagaagcagtcgtggcggttccacaccaagtac
atgatgtggttccagaggcacgaggagcccaagaccatcacagatgagtttgagcagggg
acgtacatttactttgactacgagaagtggggacaacggaagaaggagggattcacgttt
gagtacaggtaccttgaggaccgagacctccagtga
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