Salmo trutta (river trout): 115176354
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Entry
115176354 CDS
T08542
Name
(RefSeq) integrin alpha-10-like
KO
K06586
integrin alpha 10
Organism
stru
Salmo trutta (river trout)
Pathway
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04810
Regulation of actin cytoskeleton
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115176354
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115176354
09142 Cell motility
04820 Cytoskeleton in muscle cells
115176354
04810 Regulation of actin cytoskeleton
115176354
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
stru04515
]
115176354
Cell adhesion molecules [BR:
stru04515
]
Integrins
Integrin alpha subunits
115176354
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_1
Integrin_A_Ig_3
VWA_2
FG-GAP_3
FG-GAP_2
ITGAX-like_Ig_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
115176354
NCBI-ProteinID:
XP_029592144
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Position
37:complement(1633447..1684026)
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AA seq
1170 aa
AA seq
DB search
MELHKYLLLLKFIVLLKGLCECFNIDVKRPRIYTGPEEALFGFSVLQHDNAGDKSMLVGA
PWDGPSNTRRGDVYKCIVGEERSSNCTKTNLGESTLQNVSRNLKNSHLGMTLSPDSPDGF
LACAPLWSQECGTSVFSTGICASVSDDLEPRETIAPTAQRCATYMDIVIVLDGSNSIYPW
YEVQNFLSNILSKFHISPEQMQVGVLQYGEVAVHEWSLRDYQTTKEVVEAAKNISRQEGR
ETRTAYAIHMGCTEAFSPERGAREGATKVMIVVTDGESHDGEELPDALEECEKRNITRYA
IAVLGHYIRRQQDPETFISEIKYIASDPDDKYFFNVTDEAALNDIVDALGDRIFTLEGTL
GYNESSFKLEMSQIGFSTHVLDDGILFGMVGAYDWDGGVLKEGAEGRIMPTREAFESEFP
QELKNHAAYLGYTVSSVIVGDWRRLYVAGAPRFKHKGKVILFELSNNGDVNIAQALNGEQ
IGSYYGSEVCGLDVDQDGITDVLLVAAPMYLGPGNKEAGRVYIYSLSGEEVFVSNGTLKA
EDRSQDARFGYALASAPDLNHDGYTDLLVGAPLEDGHNGAIYVYHGQGIHIIHNYKQRIA
GSSLSPSLQYFGRSVSARLDLDGDGLLDLAVGAQGSAVLLSSRSIVQINMSLSFQPHSIN
VIQKTCQRGGRESACLNATACFLALSRSPGTHSNSFELSVVAMLDERKLTARALFDDSNQ
RQTQLGVRVHTGENVCHNLPFHVFDTADYIRPISFSLRFKINDTESGPVLDEGWPTTFKR
SITFFKDCGEDDVCVTDLVLQAHMDISGTRQQPYVIRSPRRRLAVEVQLQNRLENAYNTS
LTLHYSHNLHFSSLSIREDTQLKIECTSLSSNSHSCNVSYPVFRSHSKVNFMLEFEFSCT
SLLSKVQMKLTVASDSVEREATLGDNSVQLQTVVQYEPDLFITSDSNLNRYEVHPTRTIS
EAIGPEFYTHFRLQNLGCYSVSNLELRLSLPSVAAGDRVFMAVTEVFSYNVTGVNCSVDS
DVSQLKDRQRDVRPLHPEDMQQTDLLNCSRSWCVEVVCEVQQLHRGQTALIRVSRRVHDN
FFRQAKFKVVRIVSAYRLAAQESNLVTLGNGAIWRETVLEVLKGRAIPISLWILIGSIIG
GLLLLALIIFAMWKLGFFTRKQIKDEELED
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacaaatacctgctactcctcaagttcatagttctcctcaaagggttgtgt
gagtgtttcaacatcgatgttaagcggcctcgtatctacactggtccagaggaggccctg
tttggtttctctgtgctacagcatgacaatgcgggggacaaatcgatgctggttggtgct
ccatgggatggaccttccaataccaggagaggagacgtgtacaaatgcatcgtgggagag
gagaggagctccaactgcaccaaaactaacctaggtgagagcacgttacagaatgtatct
agaaacctgaagaactctcatctaggaatgaccctcagtccagactcacctgatggattc
ctggcgtgtgcgcccctgtggtctcaggagtgtggtacgtcagtcttcagtacggggatc
tgtgcttctgtcagcgacgacctggaacccagagagaccatcgcccctacagcacagaga
tgtgcaacatacatggacatagtgatcgttctggatggctcaaacagtatctatccctgg
tatgaagtccagaacttcctcagtaacatcctcagcaagttccatatcagcccagaacag
atgcaggtgggggttttgcagtacggtgaggttgcggtccatgagtggtcactgagagac
taccagacaacaaaggaggtggttgaagcagctaagaacatcagccgacaggaggggcgg
gagacacgcacagcatacgccatccacatgggctgtacggaggcattcagccctgagcgg
ggggcgagggagggggccaccaaggtcatgatcgtggtgacggacggagagtcacatgat
ggggaggagctaccggacgctctggaggagtgtgagaagagaaacatcaccagatatgcc
atcgctgtattgggtcactacatccgcaggcagcaggacccagagacatttatcagtgag
atcaagtacatcgccagcgaccctgacgacaaatacttcttcaacgtgactgacgaggcg
gcgctcaacgacatcgtagatgcactaggagaccgcatcttcactctagaggggacgctg
gggtacaacgagagctccttcaagttagagatgtcccagatcggcttctccacacacgtt
ctcgatgatgggatcctgtttgggatggtgggggcgtatgactgggatggaggggtgctg
aaggagggcgctgagggccgcatcatgcccaccagagaggcctttgagtctgagttcccc
caggagctcaagaaccacgctgcctatctgggctacacagtgtcgtcagtgatagtggga
gactggaggaggctgtatgtggctggagctcccaggttcaaacacaaaggaaaggtcatt
ctgtttgaactgagcaacaatggagatgtcaacattgcacaggccctcaatggagaacag
attgggtcgtactatggcagtgaggtgtgtgggttggacgtggaccaggatggcattact
gatgttctgctggtggcagcacccatgtacctgggccctggcaacaaggaggcaggcaga
gtctacatctactccctcagtggggaggaggtgtttgtgtctaacggtactctgaaggca
gaggataggtcccaggatgctaggtttggctacgccctggcctccgccccagacctcaac
catgacgggtacactgacctgctggtgggggcacccctagaggacggacacaatggggcc
atatacgtctaccacggccagggaatacacattatccacaactacaaacagcgtatcgca
gggtcgtccctgtccccctctctgcagtattttgggcgcagtgtgagtgccagattggac
ctggatggagatggtctgttagacctggctgtgggggcccagggcagtgctgtactactc
agttctcgtagtatagtccagatcaacatgagtctgtccttccagccccactcaatcaac
gtcatccagaagacgtgtcagagaggagggagggagtctgcctgtctcaacgctacagcc
tgcttcctggctctgtcccgctcccctggaactcacagcaacagcttcgagctgtcggtg
gtggccatgttggatgagagaaagttgacagcgagggcgttgtttgacgacagcaaccag
agacagacacagctgggggtcagagttcacacaggagagaacgtctgccacaacctgccc
ttccatgtgtttgacacagctgactacatccgtccaatcagcttctccctgcgctttaag
atcaacgacacagagagtggcccagtgctggacgaaggctggcccaccaccttcaagaga
tcgattacgttcttcaaagactgtggtgaggatgatgtgtgtgtcactgatctggtgctg
caggctcacatggacatctctgggacaagacagcagccctatgtgatccgtagccctcgc
agacgtctggctgtagaagtccagctgcagaacagactggagaacgcctataacaccagc
ctaacactgcactactcacacaacctccacttctctagtctcagcatacgggaggatacc
cagttgaaaattgagtgtacatctctcagttccaacagtcattcctgtaatgtcagctat
cctgtgttccgctcccactccaaggttaacttcatgttagagtttgagttcagctgtacg
tctctgctcagtaaagtccagatgaaactcacagttgccagtgacagtgtggagagagag
gctacgttgggagacaacagtgttcagctccagactgtggttcagtacgaacctgacctc
ttcatcaccagtgactccaatctgaaccgttatgaggtccacccaaccagaaccatatca
gaggcaataggaccagagttctacacacacttcaggctgcagaacctgggctgttacagt
gtgagtaacctggagttgaggctgagcctgccctctgtagcagctggagacagagtcttc
atggctgttactgaggtcttctcttacaacgtgacaggggtgaactgcagtgtagacagt
gatgtgtcccagctgaaggacagacagagagatgtacgaccactacatcctgaagacatg
caacagactgacctactgaactgcagcaggtcgtggtgtgtggaggtggtgtgtgaggta
cagcagctgcatcgaggacaaaccgctctcatacgagtcagccgcagggtccacgacaac
ttcttcagacaggctaagtttaaggtggtgaggatagtgagtgcctatcgtctggctgct
caggaatctaacctggtcactctggggaatggcgccatctggagggagacggtgttggag
gttctaaaggggcgggccatccctatttctctctggattctgataggtagcatcattgga
gggcttctgctattggccctcatcatcttcgcaatgtggaagctggggttcttcactcgt
aaacagataaaggacgaggaactcgaggactga
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