Salmo trutta (river trout): 115176387
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Entry
115176387 CDS
T08542
Name
(RefSeq) LIM domain-containing protein 1-like
KO
K16682
LIM domain-containing protein
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115176387
03036 Chromosome and associated proteins [BR:
stru03036
]
115176387
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115176387
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
115176387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
115176387
NCBI-ProteinID:
XP_029592256
Ensembl:
ENSSTUG00000026889
LinkDB
All DBs
Position
37:complement(15877929..15918354)
Genome browser
AA seq
682 aa
AA seq
DB search
MDKYDDLDLEASKFLEDLNMYEASRDGLFRMKKDAGNNSDFEETRRVFASKMTKIHIQKQ
QEEIAKNNLVVRMNGGQNRAADSTFYTKDRPPINSYRPAGEAAAKPPILSGPMPGTASGA
SQYAPYDALKHHSPSQQSYGYGNNYDNKERFEPHSYHHALSPTSPGNAHTYASGHPVSPS
GTSASYSSRGGQASSGSSSPGGSSGLMCSPSQQPPHHSPSPSFSDSLPSSSPTRLHQSKA
ATLQVQQRPPMVADAGAAADWMRSLGNPDLLAPLPLSAFTDGADLYQQLSPQPAPVTLPT
GPYSAASSMSPRSTASHGNLGQNGLSQSPVALTPSPTPAQVAVPAPTAPPSEAAQPKATA
GAYFPASASPSGISVSRSFGQGQGVGQAQGRQVAMGVDVPSGLDSQLSSGGVACQLQPQP
QSEAPSPPRALKLPSQTLHVQPEQGPSAAEIKLEALTKRLEKEMDAQPKADYFGSCVKCN
KAVYGATEACQAMGSLYHDVCFTCSACSRRLRGKAFYYVGGKVFCEEDFLYSGFQQSADK
CNACGHLIMDMILQALGKSYHPGCFRCVICNDSLDGVPFTVDTENKIYCVKDYHRVLAPK
CAACNQPILPSEGSDETIRVVSMDKDYHVECYHCEDCQMELNDEEGHRCYPLDGHLLCHA
CHLKHIEPGCASPTAASYQHQF
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttggatcttgaggcaagtaagtttttagaagacctcaatatg
tatgaggcatctagggacgggttgttccgaatgaagaaggacgcagggaacaactccgac
tttgaagaaactaggagagtttttgcctccaaaatgacaaaaatccacatacagaaacag
caagaggaaattgcaaaaaacaatttggtagtgagaatgaacgggggtcaaaacagagcg
gcagacagcacgttttacaccaaagacaggccgcctatcaatagctacagaccggcagga
gaagctgcagccaagcctcccatactctctggccctatgccaggcaccgccagtggcgcg
agtcagtacgcgccctatgacgctctgaaacaccattcacccagtcaacagtcatacggc
tacggaaacaattacgataataaggaacgttttgagccgcattcttaccaccacgccttg
agtcccaccagccctgggaatgcacacacatatgcttctggtcaccctgtcagtccctcg
ggcacttcggcctcctactcctcgagggggggccaggcctcctcaggatcctccagccct
ggtggatcatcaggccttatgtgcagcccatctcagcagcccccacaccactcaccatct
ccctccttctccgacagcctaccgtcttcgagccccactagactgcaccagagcaaggct
gccaccctacaagtgcagcagagaccccccatggtagctgatgctggggctgcagcagac
tggatgcggagcttggggaacccagacctgttagcaccgctccctctgagtgccttcact
gacggagctgacctgtaccagcagctgtctccccaacctgccccagttacactgccaaca
ggcccttactcagcagcatcctctatgagcccaagatcaacagccagccatggaaatcta
ggccagaatgggctctctcagagtcctgtggctctcacccccagccccacccctgctcag
gtggctgtcccagccccaactgcacccccatctgaggcagcccagcccaaagccaccgct
ggagcttacttccctgcctctgcctctccctctggaatcagtgtctctaggagctttggc
cagggtcaaggtgtaggccaggcacagggcaggcaagtggccatgggggtggatgtgccc
tctggcctagacagccagctgtcctctggtggtgtggcctgccaactccaaccccagccc
cagtctgaagcccccagcccccccagagctctcaaactgcccagccagactctccatgtc
cagccggagcaggggccgtctgccgccgagatcaaattagaagccctgaccaagcgtctg
gagaaggagatggacgcccagccaaaggcagactacttcgggagctgtgtgaagtgtaac
aaggcggtgtacggagccactgaggcctgccaggctatgggaagcctctatcatgatgtc
tgcttcacctgcagcgcctgcagcagaaggctacgggggaaagcattttactacgtcggt
gggaaggtgttctgtgaagaggactttctgtattctggattccagcagtctgcagacaag
tgtaacgcatgcggacatctgatcatggatatgatcctgcaggcccttgggaagtcctac
caccctggctgtttccgttgtgtcatctgtaacgacagtctggacggagtgcccttcact
gtggacacagaaaacaagatttactgtgtcaaagactaccacagggtcttggcccccaaa
tgtgcagcatgtaaccagcccattctgccttcagagggctctgatgaaaccatccgagtg
gtatccatggacaaagactaccacgtggagtgctatcactgtgaagactgtcagatggag
ctgaacgacgaggaggggcaccgctgctacccgctggacggccacctcctctgccacgcc
tgccatctgaagcacatcgagccgggctgcgcctcgcccaccgcagcctcctaccagcac
cagttctag
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