Salmo trutta (river trout): 115176420
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Entry
115176420 CDS
T08542
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115176420
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
stru03310
]
115176420
Transcription factors [BR:
stru03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
115176420
Nuclear receptors [BR:
stru03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
115176420
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
TPR_IFT122
Motif
Other DBs
NCBI-GeneID:
115176420
NCBI-ProteinID:
XP_029592320
Ensembl:
ENSSTUG00000047227
UniProt:
A0A674EDB9
LinkDB
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Position
37:401686..429560
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AA seq
497 aa
AA seq
DB search
MEYEEPESPEHITTEEPIKRGDTVSKKTHLTQIEVIPCKICGDKSSGVHYGVITCEGCKG
FFRRSQLPSVSYSCSRQSNCPIDRASRNRCQSCRLQKCVNQGMSRDAVKFGRMSKRQRES
LRAEVERHRQQQQQHLQAEAQPALPYPSKACCFRTPHLLQAPVLAYSFPGEPELPPCPTD
VLPYLVCSPGESQAPGLAYQGSCVSPGSGHSDERGFDSRQPSPDQTIGMGIRSYDPEDPY
CPYPPSLLHIEELCDSIVRSHRDTSQFRLEDLQALRWKLFSREEIHAYQSKSIDEMWQHC
AVRLTEAVQYVVEFAKRIPGFRGLGQNDQITLLKTGSMEVVLVRMSRCFNTENSTVFFDG
KFASTELFKSLGCGDLMVAVFDFAHSMCALRLTEQQMALFSSLVLINSDRPCLEDRGRVH
RMRRHLEVCLSHMLRRDNQESLQHKLYQKVSVLQSLCSLHVEKLHWFSQRYPLTVHSVFP
PLYKELFTSDLPSVDSL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggaatatgaggagcccgaatcaccggaacacatcactacagaagaaccaatcaaaaga
ggagacactgtgtccaagaagactcatttgactcagattgaggtgattccctgtaagatc
tgtggtgataaatcatcaggagttcactatggagtcatcacctgcgagggctgcaagggt
tttttccgacgtagccagctgccgtccgtctcctactcctgttccagacagagtaactgt
cctatagacagagccagccgcaaccgctgccagagctgccgactgcagaagtgtgtgaac
cagggcatgagccgggatgcggtgaagtttggtcggatgtcgaaacgtcagcgggagtct
ctgcgtgccgaggtggagagacaccgtcagcagcagcagcagcatctccaggcagaggcc
cagcccgccctgccctaccccagcaaggcatgctgtttccggacaccccacctgctccag
gccccggttctggcctactccttcccgggagagccagagctgccaccctgcccgacagat
gtgctcccctacctggtgtgctccccaggcgagtcccaggctccaggtctggcctaccag
ggctcctgtgtgtctcctggcagtgggcactcagatgaaagagggttcgactcccgtcag
ccgtctcctgaccagacaatagggatgggaattagatcgtatgacccagaagacccctac
tgcccttaccccccctccctgctacacatagaggagctgtgtgacagtatcgtgcggtcc
catagggacaccagtcagttcagactggaggatctgcaggctctgagatggaagttgttc
agcagagaggagattcatgcctaccagagcaagtcaatagatgagatgtggcagcactgt
gccgtgaggctgactgaagcagtacagtacgtggtggagttcgccaaacgcatcccaggg
ttccgtgggctcggacagaacgaccagatcaccctgctcaagactggttcgatggaggtg
gttctggtcagaatgagtaggtgttttaacacagagaacagcaccgtcttcttcgatggg
aagtttgccagcactgaacttttcaagtctctgggctgtggtgatctgatggtggcggtg
ttcgactttgctcacagtatgtgtgccctgagactgactgagcagcagatggctctcttc
agctcactggtgctcattaactcagatcgcccctgtcttgaggatagaggcagagtacat
agaatgaggagacacttggaggtatgcctcagccacatgctacgcagagacaaccaggag
agccttcagcacaagctctaccagaaggtgtcagtgttgcagtctctgtgcagtctgcat
gtagagaagctgcactggttcagccagcgctacccgctcaccgtccactctgtcttccct
cctctatacaaggagctgttcacctccgacctgccttctgtggactccctctga
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