Salmo trutta (river trout): 115176727
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Entry
115176727 CDS
T08542
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115176727
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
115176727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
115176727
NCBI-ProteinID:
XP_029592817
Ensembl:
ENSSTUG00000008510
LinkDB
All DBs
Position
3:complement(47498668..47520780)
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AA seq
662 aa
AA seq
DB search
MDQAFPSLQTPATELQLRVDFFRKLGYSPLEVRAALLKLGLSTDTNSVLGELVRSGASTG
TSNSTIPESGEDATGPKSNTGSSMASFRTHGSQGDRPVSLLEDRRDTDSGLKPIVIDGSN
VAMSHGNKEVFSCRGIELAVIYFLERGHSTVIVFVPSWRKEQPRPDVPITDQHILMELEK
KKIVVFTPSRRVGGKRVVCYDDRFIVKLAYESGGVIVSNDTYRDLQGERPEWKRCIEERL
LMYSFVNDKFMPPDDPLGRHGPSLENFLRKKPLLPEHKRQLCPYGKKCTYGVKCKFYHPE
RTHQSHCSLADELRENARLSSVKEDRNHMMSHLRGPQSDTSPFPSYSLENDLEHRLTLEH
RGSLREGPNCQLTENMLLNWDGPHSSRNQQARSPIGVGQGQMDWANMPSMLSPPATTDLP
YASISHERLDSGFGTYESQYSDVSQGHSKAFSPRQQPQQQGFPSGSRHPGMHPERLAQDS
FQPCRCCFHLAPFTGPQQQHHSNPHLESQSQPRYDTYSPPLFPPNMHHYSLPCNFQQGGV
GAHNFHPHQHPQKYWSDPFHGGVPQARASCSLTPSPHFHHPPTPHGAPHSCFSYRNQQEL
NSWAQSPPPFAFDTDREELRKKLQAIFNPHQVDTVMGMFPHLMDAQKLAAEILNFKSEGG
AF
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcctttcccagtctccagaccccagccactgagcttcaactcagggtggac
ttcttcagaaagttgggctactcccccttggaggttcgggccgccctgctgaagctaggc
ctgagtacagacaccaactctgtactgggggagctggtccgcagcggagccagcactggt
acttctaactccaccattcctgagagtggtgaagatgctactggccccaaaagcaacaca
ggctccagcatggcctcctttaggacccatggctcccaaggagacagaccagtctcatta
ctggaagacaggagggacacagacagtggactgaaacctatcgtcattgacggcagcaat
gtggccatgagtcatggtaacaaggaagtgttctcctgtaggggaattgagttggcagtg
atctatttcctggaaagaggtcactcaaccgtcattgtgtttgtgccctcctggcgcaag
gagcagcccaggcctgatgtccccatcacagaccaacacattctaatggagctagagaag
aagaagatagttgtcttcactccctcgagacgtgtcggtggtaaacgggtggtctgctac
gacgaccgttttattgtgaagctggcctacgagtcgggcggcgtgatcgtgtctaacgac
acctatagggacctccagggagagcgtccggagtggaagcgctgtatcgaggagaggctg
cttatgtactctttcgtcaatgacaaattcatgcccccagatgacccgcttggtcgtcat
ggtcccagtctggagaacttcctgaggaagaagcctctactaccagaacacaaacgccaa
ctctgtccttatggtaaaaagtgcacgtacggcgtaaagtgtaagttctaccaccctgag
cgcactcaccaatcccactgctcattggctgatgagctcagggagaacgcaaggctctcc
tcagtaaaagaggaccggaatcacatgatgtcacacctgaggggcccccagtccgatacg
agcccctttccctcctattctctggagaatgacctggagcacaggctgacgttggagcac
cgcggttccctgagggagggtcccaattgccagttaactgagaacatgttgctgaactgg
gatgggccacactccagtaggaaccagcaggcccgcagccccataggagtaggccaagga
caaatggactgggccaatatgcccagtatgctctccccccccgctactactgacctcccc
tatgccagcatctcccatgagcgcctggactctggttttggcacctatgagagccagtac
tcagatgtgtcccaaggccacagcaaggccttcagtcccaggcagcagccgcaacagcag
ggcttcccctctggttccagacatccaggcatgcatccagagaggctggcccaggacagc
ttccagccctgcaggtgttgtttccatttggctcccttcacaggtccccagcagcagcac
cacagcaacccacacctcgagtcccaatcccagccaaggtatgacacctactcgcctcct
ctgttcccacccaacatgcaccactacagcctcccctgcaacttccagcaaggtggggtg
ggggcacataatttccacccccatcagcacccccagaagtactggtcagaccccttccat
ggcggggtcccccaggctagggcgtcgtgtagcctcaccccgagcccccacttccatcac
ccccctaccccacacggggccccccactcatgcttctcttacaggaatcagcaggaactt
aactcctgggcccagtcacctccaccttttgcctttgacacagacagagaggagctccgt
aagaaactgcaggccatcttcaacccccaccaagtggatacggtcatggggatgttccct
cacctgatggacgcccagaagctggctgcagagatcctcaatttcaaatctgagggaggg
gccttctga
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