Salmo trutta (river trout): 115177028
Help
Entry
115177028 CDS
T08542
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115177028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115177028
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115177028
Spliceosome [BR:
stru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115177028
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
115177028
NCBI-ProteinID:
XP_029593334
LinkDB
All DBs
Position
37:complement(25071192..25088858)
Genome browser
AA seq
1054 aa
AA seq
DB search
MANLEQWVSDSLHDILGLSDRYVAQFMIGSARKSSSSQDFVTHLKSTGTIDINQSVIAFA
QELYEKIPRKQVVEKPARAIERHVMEIERKNRTYTLLSDSESDGEAVREREKEKKKSKDR
GDKRKHLRKREESQSSSEEETPKSSKLGHGGQKSSKKDEEEEEEEWEKEERERVLDLEER
DAFAERMKLKDKDKTRNIMERTDKKGYEEAQKRLKMAEEDHKKILPELRKESRRNYLSKR
EAEKLEDLEAEIADEEYLFSTDALTERERKELEYKRNLRDLAKDYKKAGAKEKEERKNRY
YMPEEKRSKDIPQRDMELELEMPMEGGGEQGRWEEERLKTASLIFGAKKEREKGLKAERE
KYQLILEEDEMINFVSSAVIMKGTQDEKEQEQAALSQAEVQKQSIQEVRRSLPVFPYRED
LLLAIQQHQILVIEGETGSGKTTQIPQFLMESGYNDGGMKIGCTQPRRVAAMSVAARVAQ
EVGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTL
HTDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAP
EADYLEACVVSVLQIHVTQPPGDCLVFLTGQEEIETCCELLQERCRRLGSKISELLVLPI
YANLPSDMQAKIFSPTPPGSRKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGME
SLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLL
KSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKM
ILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARQNFVVPGGDHMVLLNVYTQ
WLESGYSTQWCYENFIQFRSMKRARDVREQLEGLMDRIEVEVCSSGGDIVPIRKAVTAGY
FYHTARLSKGGFKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSSW
LLEVAPHYYKNKELEDSSSKKMPRKQGKAKEELG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctagaacaatgggtgagcgacagtctgcacgacatccttggccttagtgac
agatatgtcgcccagttcatgatcggctccgcgcgtaaatcctcgagctctcaagacttt
gtgacccacctcaagtcgacgggcaccatcgacattaatcagagtgtgatcgcctttgca
caggaactgtatgaaaagattcctcgtaagcaagtggttgaaaagccagccagagcgata
gagcgacatgtcatggagattgagaggaagaatcgaacttacaccctactgtcggacagc
gagagtgacggagaggcagtgagagagagggagaaggagaagaagaaaagtaaagacaga
ggcgataagaggaagcacctcaggaaaagggaggagagtcaatcatctagtgaagaggag
acccctaaaagcagtaagctgggccatggtggccagaagtccagtaagaaggatgaagag
gaggaggaggaggagtgggagaaggaagagagagaacgcgtactggatctggaagagagg
gatgcctttgccgaacggatgaaactgaaggacaaagacaagacgaggaacatcatggag
agaacggacaagaagggctacgaggaggctcagaaaagactaaagatggccgaggaagat
cacaagaaaatccttccagagctgcggaaggagtctcgcaggaactacctgtccaagaga
gaggctgagaaactggaggacctggaggcggagatagccgacgaggagtacctgttctcc
acggacgcgctgacggagagggagcggaaggagctggagtacaagcgcaacctcagagac
ctggccaaggactacaagaaagccggcgccaaggagaaggaggagaggaagaacagatac
tacatgccggaggagaagaggagtaaagatattcctcagagggacatggagctggagttg
gagatgcccatggagggtggaggagagcagggtcgctgggaggaggagaggttgaagacc
gcctcgctcatcttcggggccaagaaggagagggagaaagggttgaaggcagaaagagag
aagtaccagctgatcctggaggaggacgagatgatcaactttgtcagcagtgccgtcatc
atgaagggaacccaggatgagaaggagcaggagcaggcagccctgtcccaggcggaggtc
cagaagcagtccatccaggaagtgagacgcagcctccccgtgttcccatacagagaggac
ctgctcctggccatccagcagcaccagatcctggtcatcgagggagagacgggctccggc
aagaccacccagatcccccagttcctcatggagtcgggctacaatgatggaggcatgaag
attgggtgtacccagcctcgtagagtggcagccatgtccgtagcggccagggtggcacaa
gaagtgggcgtcaagctgggcaacgaggtaggctacagtatccgttttgaggactgtacg
tcggagaggacggtactcaaatacatgactgacggaatgctgctcagagagttcctgaca
gagcctgatctggccagctacagtgtggtcatcattgatgaggcccacgagcggacactg
cacacagacatcctgtttggcctgatcaaggacattgcccggttccgtccggacctgaag
gtgctggtggccagcgccaccttggacacagagcgcttctcctgcttcttcgacgacgcg
ccggtattcagaatccccggcaggaggttccctgtggacatcttctacacgaaggctcct
gaggcagactacctggaggcctgtgttgtgtcggtgctacagatccacgtcacacagccc
cccggagactgtctggtcttcctcactggacaggaggagattgagacttgctgtgagctg
ctgcaggagagatgcaggcgtttgggttctaagatatcggagcttctggtgcttcccatc
tacgccaacctaccttcagacatgcaggccaagatcttcagccccacaccccctggctca
cgcaaggtggtggtggccactaacattgcagagacctctctaaccatcgatgggatcata
tacgtcatagatccaggcttctgcaagcagaagagctataacgctcgcactgggatggag
tctctgattgtcacgccttgctcacgggcctcagccaatcagcgagcaggtcgtgcaggc
agagtggcggctgggaagtgtttccgtctctacactgcgtgggcgtttaaacacgagatg
gaggagtccaccgtgcctgagatccagcgaactaacctgggcaacgtggtgctactgctc
aagagcttgggaattaatgacctcatccactttgacttcatggacccgccgcctcacgag
accctggtgctagctctggagcagctgtacgccctgggtgcactcaaccacctcggagag
ctcaccaagttgggccgcaggatggctgagctgccggtggaccctatgctgagcaagatg
atcctggcctcagaacagtataagtgttctgaggaggtgttgaccatcgcggccatgctg
tctgtgaacaactccatcttctaccggcccaaagacaaggtggttcacgccgacaacgcc
aggcagaactttgtggtgcccggaggagaccatatggtgctgctcaacgtctacacacag
tggctggagagtggctactccacccagtggtgctacgagaacttcatccagttccgctcc
atgaagcgggcgcgggatgtcagggagcagctggagggcctgatggacaggatcgaggtg
gaggtgtgcagctcaggcggagacattgtgcccatccgcaaggcagtgacggcggggtat
ttctaccacacggcgcggcttagcaaggggggcttcaagacggtgaagcaccagcagaca
gtctacgtccaccccaacagctccctgttcgaggagcagccccgttggctcatctaccac
gagctggtcttcaccaccaaggagttcatgagacaggtgattgagatagacagcagctgg
ctgctggaggtggctccccactactacaagaacaaggagctggaggacagcagcagtaag
aagatgcctcgcaaacagggcaaggccaaggaagagctgggctaa
DBGET
integrated database retrieval system
