Salmo trutta (river trout): 115177116
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Entry
115177116 CDS
T08542
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115177116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115177116
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115177116
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115177116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
115177116
NCBI-ProteinID:
XP_029593496
Ensembl:
ENSSTUG00000038511
LinkDB
All DBs
Position
37:7647139..7658458
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AA seq
959 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLSFSSSANSGSSSSSSSLVSMAAVVG
GNPGVPTSNSLIGSFSSAVQQHQPQPPQQPILQPLQQPQQPQTKPCTPSPPSHPLLSTAP
SLPTPTTPISVSPNSLPQVSSGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSAS
LNTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGLG
LLGSSPAHSSLTGGILGLVPGQSVIPGPPQIPLSPVGAAPGGSVGMMGGNGGSMGPIGGG
VGSNAAPARPPSGLKQNGNTSSSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDNG
PSLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMEPRMSAQ
APEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGS
SAAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERI
RQYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagacctaaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagaca
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccgacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccactacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgtccttttcctcgtcc
gccaattccgggtcctcttcttcttcctcctctcttgtctccatggccgccgttgtcgga
ggcaaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtgcaa
caacatcagcctcaacctccacagcaaccaatcctgcagccactgcaacaaccacaacaa
ccccaaacaaaaccttgcacccccagcccacccagccaccccctcctctccaccgccccc
tctctccccacacccactacacccatctcagtctccccaaactccctgccccaggtctcg
tctggtcatatcctcaactccagcctagggcttgggttgggcctgggtaaggttggcatg
acggggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctct
ctgaacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagct
gcgttgggaggcctgggtctgagtaccaccacccagtccagtgtctcagtggagagctcc
tccatccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggc
ctgctggggtccagcccagcacacagctccctgactggggggatcctgggcctggtgcct
gggcagagtgtgatcccagggccccctcagatccctctcagcccggtcggtgctgcccct
ggagggtcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagga
gttgggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaaacaca
agttccagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaa
tcacagagcagccagccttcctcgctgacctcctcagccagtcagcctatggacaacggt
cccagcctcatcagctccatcaccttgccccccagctctccgtccccctcgttttcggac
agtatccccggtggtgggagtctcctcaacggaccccactcctacacacaggcctctgag
ggcctcaagcttcctacagacctccgtcagatactgatggagcccagaatgtcagcgcag
gccccagagccaccaggggccatggcaacagccactaacacacgaaagagaaagcagtgt
caggccccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatca
ggtctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcg
tcggctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatcccc
ccttccctgggggtgtgtcccctgggtcccactcccctctccaaggaccaggtgtaccag
cagaccatgcaggaatctgcttggacacacatgccgcacccctcagactccgagaggatc
aggcaatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccc
caccactcagactctatagagttctaccagagactgtccacagagactctcttcttcatc
ttctactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcag
tcgtggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagact
atcactgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcag
aggaagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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