Salmo trutta (river trout): 115177149
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Entry
115177149 CDS
T08542
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115177149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115177149
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115177149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
ANAPC3
TPR_8
ARM_TT21
TPR_7
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
115177149
NCBI-ProteinID:
XP_029593564
Ensembl:
ENSSTUG00000016900
LinkDB
All DBs
Position
37:5487352..5507200
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AA seq
749 aa
AA seq
DB search
MADNNTELNEVKHDNTSSPGISDQEKAIAANALEAFTAGNYEESLKHLGKLQELNKEDYK
IALNKAIAEFYKSGQTTTCTLKQTLIAMKNQVHTSMEDIDGLDDVENSLLYYNQAIIHYH
MRQYSEAIAIGERLYQFLEPFEEKFALAVCFLLVDLYLLTYQPEKALHLLAVLEKLSVQG
NNKNGKGESVNSANKDGRNQKAEFIGMIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVM
NTAGNSASSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGAIKTGECVRCMFWNNLGCIH
FAMGKHNLGIFYFKKALQENDHTCAQLGDGGATGNGQSKQFSGIPMCALLANKRYELLYN
CGIQLLHIGRPLAAFDCLMDAVQVYHSNPGLWLRLAECCIAANKGSLEQDNKGLPSKKGI
VQAIVGQGYHRKIILASQSTQNTIYSDGQSAAIPVASMEFAAICLRNGLVLLPDHQQQEN
KAENGPKTPSQSGSTESGSENSDACSGKGQEGDKFLSAAPSSPLRKQEVENLRCSLLACS
AYVALVLGDNLMALNHAEKLLHQTKLSGSLKFLGHLYAAEALISLDRISEAIGHLNPENI
TDVSMGVLSSEQDQGPDKGDLEPVESSGKQTPLCYPSTVSSARSIMLFNLGSAYCLRSEY
EKARKCLHQAASMVNTKEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSVLQTPSPD
TRKKPVPSSFQPVQPPIQMPSPFTTVQRK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacaacacagaattaaatgaagtcaagcatgataacacttcttcccctggg
atttcagaccaagaaaaagcaatagctgcaaatgcgttggaggcgtttacggccggaaac
tatgaggaatctttgaaacaccttgggaagctacaagagttgaacaaggaggactacaag
attgctttgaataaagcaatagctgaattctacaagagcggccaaaccaccacatgcacc
ctgaagcagactcttattgcaatgaaaaaccaggttcacacttcaatggaggatattgat
ggtttggatgatgtagaaaacagtctgctctactacaatcaagctatcattcactaccac
atgagacagtactccgaagctattgctattggagagaggctgtaccagtttctggagccg
tttgaagagaagtttgctctggcggtctgcttcttgctggtggatctgtacctgctaacg
taccagccagagaaggccctccatctccttgctgtgctggagaaactgtctgtacaggga
aacaacaagaacggcaaaggggagagtgtcaacagcgccaacaaagatggtcggaaccag
aaggcagagttcattggcatgatcgaagcagcaaaatccaaaatgcaccagtacaaagtg
cgagcgtacattcagatgaagtcatcaaaggcatgcaaaagggagatcaagtctgtgatg
aacacagcagggaattctgcttcctcactcttcctcaagagtaactttgagtacctgaga
ggaaactaccgcaaagcagtgaagctcttaaacagctccaacatcgcagagcaccctggg
gccatcaaaacaggtgaatgtgtgcgctgtatgttctggaacaatctgggttgtatacac
tttgccatggggaaacacaacctaggcatattctacttcaaaaaggccctgcaggagaac
gaccacacgtgtgcacagctgggggacggcggggcgacgggtaacgggcaatctaagcag
ttctcgggcatccccatgtgtgcgctgctagccaacaagcgttatgagctgctgtataac
tgtgggatccagctgctgcacatcggccggcccctggcagccttcgactgtctgatggat
gctgtgcaggtgtaccactctaaccctggcctctggttacggttggctgagtgctgcatc
gctgccaacaagggtagcttagaacaagacaacaagggtcttcccagtaaaaaaggtatc
gttcaggccatcgttgggcagggctaccatcgcaagatcatcctggcatcacagtccacc
cagaacacaatctacagtgatgggcagtctgcagccattccggtggccagtatggagttt
gcagcgatctgtctgaggaacggcctggtcctcctccctgatcaccagcagcaggagaac
aaggcagagaacggccccaagacacccagtcagtcaggcagcacagagagcggctcagag
aacagcgacgcctgcagtgggaagggtcaagaaggagacaagttcctttctgcagcaccg
tcttcacctctgaggaaacaggaggttgaaaacctcaggtgttccctcctggcctgcagt
gcctacgtggccctggtgttaggagacaacctgatggccctgaaccatgcagagaagctc
cttcaccagaccaagctgtctggatcactcaagttcctgggccacctgtatgctgcagag
gccctcatatccctggaccggatctcagaggccatcggtcacctcaacccagagaacatc
actgatgtctccatgggggtgttgtccagcgagcaggaccaagggccagataaaggggat
ctggagcctgtcgagtcatcagggaagcagactcctctgtgttaccccagcacagtgagc
tcagcccgatccataatgctgttcaacctgggcagtgcctactgtctgaggagtgagtac
gagaaggcccgcaagtgcctgcatcaggccgcctccatggtgaacaccaaggagattcct
cctgaagccatcttactggctgtctacctggagctgcagaacgggaacacgcagctcgcc
ctgcagatcatcaaacgtaaccagctcctcccctcagtgctccagacgccctctccagac
acacgaaagaagcccgttccctcctccttccagcctgtccaaccacccatccagatgccc
tcaccgttcacaacagtccagcgcaaatga
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