KEGG   Salmo trutta (river trout): 115177842
Entry
115177842         CDS       T08542                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
stru  Salmo trutta (river trout)
Pathway
stru03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    115177842
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:stru03021]
    115177842
   03036 Chromosome and associated proteins [BR:stru03036]
    115177842
Transcription machinery [BR:stru03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     115177842
   Coactivators
    SAGA/TFTC/STAGA complex
     115177842
Chromosome and associated proteins [BR:stru03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     115177842
    STAGA complex
     115177842
    TFTC complex
     115177842
    SAGA complex
     115177842
    SLIK complex
     115177842
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st WDR55 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_DCAF12 Beta-prop_WDR19_1st Tricorn_2nd Beta-prop_Nup120_160 WD_LRWD1 LisH_PAC1 LisH_TPL PROPPIN RAB3GAP2_N VPS8_N Beta-prop_ACSF4 VID27 Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 115177842
NCBI-ProteinID: XP_029594693
Ensembl: ENSSTUG00000048640
LinkDB
Position
38:complement(8065410..8071995)
AA seq 747 aa
MAAVQDGQLNLEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADDSLVSESAGAGSGGVPNVSADGGDANSLLSRVSM
ATPVAPPATAAPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLDCH
RAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEHMK
GNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQI
DAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGS
KSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAYQG
LTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDEKT
ASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQ
FSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTRFHPNSNYVATGSADRTIR
LWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDVGHGLMVGELKGHTD
TIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLLGT
YMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq 2244 nt   +upstreamnt  +downstreamnt
atggcggctgtgcaagatggtcagctcaatctggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaatatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctcctgcgggatcgggtgaagatcaacagacactgctcgcg
gtgctgcaatttctcaagaggaataaattgaccgagtcggtcgacattttgcggcgagaa
gcgggcttatctgcagatgattccctggtatccgagtcggcgggagctggatcgggtggc
gtcccaaatgtcagtgctgatgggggggatgccaactctctcctcagccgagtgtcaatg
gccacccccgtcgcacccccggccaccgcagccccaaaagtggtggcagcatcaggtggg
gaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggaccctgtc
ctctacccactctactataacggcctgaagaagtttattgagtctgtcctggactgccac
agagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggagctggtc
tacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgaccaggag
tgttactacgaggaggacctccgcatcctctcgagcatgtccaagaaggaacacatgaag
ggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcccgtgac
tcctaccagctgctgaagaggcaccttcaggaacgtcagaacaaccagatctggaatatt
atacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagtcagatt
gatgccatgtcgggcagtctggctggggagggcaagagagatgccaacaaagccaaggtg
ttctatggtcttctgaaggagccagagatcgaggtgcctctggatgatgaggatgaggag
gcagagaacgaggagggcaaacccaagaagaagaaaccgaagaaggacagcatgggctcc
aagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctccccgagctg
aaggactctgacaagctggacaagatcatgaacatgaaggaggccactaagaagatccgt
ctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttaccagggt
ctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgctgactcc
accgttagggtgtggagcgtcacacccaagaaactacgccgggtcaaatctgcagcagac
ctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgagaagacg
gccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagcttcagc
cctgacaggaactacctgttgtccagttctgaggacggtacggtcagactgtggagtctg
cagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggacactcag
ttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgtctgtgg
gcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatcacgtgc
acccgcttccaccccaactccaactacgtggccacgggttcagctgaccgtaccatccgc
ctctgggacgtcctgactggaaactgtgtccgcatcctcacgggtcacaagggccccatt
cattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgacgggagg
gttctactgtgggatgttggtcacggcctgatggtcggagagctgaagggacatactgac
accatctacgccctcaagttcagcagggacggagagatactagcctcaggctcaatggat
aacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggatgacttc
accgcggcaacaggtcacatccatctaccagagaactcccaggagctgttgctaggcacc
tacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaacctactgctg
gctgcaggggcctacaacccatga

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