Salmo trutta (river trout): 115177842
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Entry
115177842 CDS
T08542
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
stru
Salmo trutta (river trout)
Pathway
stru03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115177842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115177842
03036 Chromosome and associated proteins [BR:
stru03036
]
115177842
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115177842
Coactivators
SAGA/TFTC/STAGA complex
115177842
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115177842
STAGA complex
115177842
TFTC complex
115177842
SAGA complex
115177842
SLIK complex
115177842
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_VPS8
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
DSE1_N
Beta-prop_Aladin
Beta-prop_TEP1_C
PAC11
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR41
CFAP251_N
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_DCAF12
ASA1
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Tricorn_2nd
Beta-prop_Nup120_160
WD_LRWD1
LisH_PAC1
LisH_TPL
PROPPIN
RAB3GAP2_N
Beta-prop_ACSF4
VID27
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
115177842
NCBI-ProteinID:
XP_029594693
LinkDB
All DBs
Position
38:complement(8065410..8071995)
Genome browser
AA seq
747 aa
AA seq
DB search
MAAVQDGQLNLEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADDSLVSESAGAGSGGVPNVSADGGDANSLLSRVSM
ATPVAPPATAAPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLDCH
RAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEHMK
GNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQI
DAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGS
KSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAYQG
LTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDEKT
ASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQ
FSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTRFHPNSNYVATGSADRTIR
LWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDVGHGLMVGELKGHTD
TIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLLGT
YMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagctcaatctggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaatatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctcctgcgggatcgggtgaagatcaacagacactgctcgcg
gtgctgcaatttctcaagaggaataaattgaccgagtcggtcgacattttgcggcgagaa
gcgggcttatctgcagatgattccctggtatccgagtcggcgggagctggatcgggtggc
gtcccaaatgtcagtgctgatgggggggatgccaactctctcctcagccgagtgtcaatg
gccacccccgtcgcacccccggccaccgcagccccaaaagtggtggcagcatcaggtggg
gaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggaccctgtc
ctctacccactctactataacggcctgaagaagtttattgagtctgtcctggactgccac
agagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggagctggtc
tacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgaccaggag
tgttactacgaggaggacctccgcatcctctcgagcatgtccaagaaggaacacatgaag
ggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcccgtgac
tcctaccagctgctgaagaggcaccttcaggaacgtcagaacaaccagatctggaatatt
atacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagtcagatt
gatgccatgtcgggcagtctggctggggagggcaagagagatgccaacaaagccaaggtg
ttctatggtcttctgaaggagccagagatcgaggtgcctctggatgatgaggatgaggag
gcagagaacgaggagggcaaacccaagaagaagaaaccgaagaaggacagcatgggctcc
aagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctccccgagctg
aaggactctgacaagctggacaagatcatgaacatgaaggaggccactaagaagatccgt
ctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttaccagggt
ctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgctgactcc
accgttagggtgtggagcgtcacacccaagaaactacgccgggtcaaatctgcagcagac
ctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgagaagacg
gccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagcttcagc
cctgacaggaactacctgttgtccagttctgaggacggtacggtcagactgtggagtctg
cagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggacactcag
ttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgtctgtgg
gcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatcacgtgc
acccgcttccaccccaactccaactacgtggccacgggttcagctgaccgtaccatccgc
ctctgggacgtcctgactggaaactgtgtccgcatcctcacgggtcacaagggccccatt
cattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgacgggagg
gttctactgtgggatgttggtcacggcctgatggtcggagagctgaagggacatactgac
accatctacgccctcaagttcagcagggacggagagatactagcctcaggctcaatggat
aacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggatgacttc
accgcggcaacaggtcacatccatctaccagagaactcccaggagctgttgctaggcacc
tacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaacctactgctg
gctgcaggggcctacaacccatga
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integrated database retrieval system
