Salmo trutta (river trout): 115178555
Help
Entry
115178555 CDS
T08542
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115178555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
FlgT_N
Motif
Other DBs
NCBI-GeneID:
115178555
NCBI-ProteinID:
XP_029595671
LinkDB
All DBs
Position
38:8868310..8901384
Genome browser
AA seq
1663 aa
AA seq
DB search
MDNLTTTKIVNAGAGGKVVKETVTTTTRLTSLPPTSGGLSSRSGLLSTGGGESTSRAITG
GSSSVLVSSSAAAGSGGGAKSGYGGGSVSKSTTITTIESPSLSSGASGASGAAFRSSGAS
GASFGASKTSSSLSNSGGGLMSSSSSSLTGGSSSGFVSSSKGAGAGGGSFVIGSSSGSSS
GFVSSSKGAGAGGGSFVTGSSSGSSSGFASSSGTGTGGGDSSSAKMSAGGLGSVTVSTVT
RSNYSSSTEAGSGGVKRGGAQGSASSAVSFSPTPMERKSMTTTMIARSMGYEGRSSGNSS
PEYTRREYAAASAAASTPTRGRSHSRESEIRCRLQSASPTAKRWTELDDVKRLLKGSRSS
SISPPRSPTSTLPIPRKASVETRTRPNSSQSGQYNSATLDLGMPSYVWSGPTAGGYGYHS
NAINRSPTSTLQHSPTTLTATGLQNNLALSSTSMNSGLSASSTVHGMQKNLATTTGSILT
ANGVNAQTVYGVQKNVTSTGVSTNTVAPSSPTGEEAKEYKFMLLEKENAPVKKETERLIM
AKDTGKQFSSAATAIAYSEDSLKKEKKKVSGFVETATARTTETNAGSLMKVSTKDKATYA
EIHKDESGGGLGFWSCCSWWKWLLGLLLGLLLLLGLLLGLIALAEEVKRLKARVDALEQA
SSSSSAHSSRLSSSSNINIIDPLESAYIDKTSSPSSTTLLRSDNGINLGVAAGAGPGSAN
GPGQDPVALQRAVQQIVRTELQSDTVRATLAHSMKGARGEPGTKGDQGGPGVKGDNGFPG
LPGPPGQMGHSGQEGPRGPKGNAGEAGAEGPPGQRGREGPTGSRGEPGPPGFGEKGDKGS
PGEPGGPGPAGTAGPVGPKGSAGGQGATGIPGTPGPQGFRGEAGAPGPKGEKGPAGPPGN
KGEPGEKGPRGTSGDPGQRGLPGPDGTKGSKGPTGAPGADGEKGSRGDKGLDGLPGPRGP
AGPPGDTGLPGIPGLQGPPGIPGNPGQPGGKGEAGEPGRIINAAGSSSVAIPGPPGSPGP
AGVAGSPGLSGPVGPAGLPGTPGPRGEKGEEGEKGDQGKPGITVQTVETTEKRAPVASLP
GPPGPPGPPGEPGAQGLLGKGLPGPEGPKGEPGVPGVGVPGPRGDKGEPGSFVPNSGTFF
AGPPGPAGPTGLPGSPGPQGYQGDPGQPGLPGVPGDPGVGFPGPQGQPGGPGPEGDSGLP
GPQGPEGPEGQPGPKGEAGVPGAPGIPGYSSGGSSRSSPGAPGPPGPPGEPGRDGPPGSG
DGTPDVRQYITEYLKSDGVREYMSGPPGPPGVPGPPGGGSVESVDDLASRVIAYIQSGGI
ASGVPGPPGPPGAPGGGSTSLNDIISLLQREEVRHYIVGPPGPAGPPGIPGIPWRGGYGF
NTNEVAGRVLNLMNEQGMVGMLGPPGPPGPPGLPGSYSDISYLLQNAEYKGVLGAQGPPG
PPGVPGPAGPQGPAGPSGQAPYSSSGYRLEEVKDYIQSDGIRGGMFGPPGPPGPPGPQGH
KGEQGSSGYGHAFDHRTSEGRRLAETETDYSNIAVRVTDYIKYHGLLRDVVENQSQLEKS
QVVQGPPGPPGPPGAPGFSRVFGSHSNATDLVEYIRAHGNIVGPPGRPGQKGDIGHTGHK
GERGLDGIPGRTGLNGLEWKRGGKGEKGEYTLVTHRRKRNVGV
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtgccggtggcaaggttgtcaaa
gaaacagtaaccacaacaacccggttgacatcactgccgccaacctcaggcggtctctct
tcgaggagtgggctgctctctactggaggaggagagtctaccagtagagccatcaccgga
ggcagtagctcagtgctagtatcctcctctgctgcagccgggtctgggggtggagctaaa
tctgggtacggagggggatccgtcagcaaatcaaccaccattaccactatagagtccccc
tctttatcctccggtgcttcaggggcctctggcgcagcttttcggtcttcaggggcctcg
ggggcatcgtttggggctagcaaaaccagcagctccctctccaattctggagggggtctt
atgtcaagctccagttccagtcttactggtggttccagttctggttttgtctctagttcc
aaaggagcaggagcaggaggaggcagctttgtcattggttccagttctggttctagttct
ggttttgtctctagttccaaaggagcaggagcaggaggaggcagctttgtcactggttcc
agttctggttctagttctggttttgcctctagttctggtaccggaactggaggaggggat
tcttctagtgccaaaatgtcggccggcggcttgggctctgtgaccgtttccacggttacc
aggtccaactacagctcctcgacagaggcgggttcaggtggcgtgaagaggggcggggca
caggggtctgcatcctctgctgtcagcttctcccccacccccatggagagaaagagcatg
accaccaccatgatcgcccgctccatgggctacgaaggaagatccagtggaaactcatct
ccggaatacacaaggagagaatatgctgcagcaagtgcagctgccagtacacccaccaga
gggcggagccacagcagagagagtgagatcagatgcagactgcagagtgcctcccccaca
gccaaaagatggacggagctggatgatgtgaagcggctgctgaagggaagtcgctccagc
agcatcagcccccctcgctcccccaccagcaccctccctatccccaggaaggccagcgta
gagaccagaaccaggccgaacagctcccagtcaggccagtacaacagcgccaccctggat
ttaggaatgccttcctacgtgtggtcaggccccacggctggaggctatggttaccacagc
aacgccatcaaccggtcccccacctccaccctccaacactcacccaccacactcacagcc
acagggcttcagaacaacctggccctcagctctacatccatgaactctggactctctgcc
tctagcactgttcacggtatgcagaagaacctggccaccaccactggcagtatcctaaca
gctaatggagtcaacgcacaaacagtctatggtgtgcagaaaaatgtcacaagcacaggg
gtgtccacaaacacagtggcgcccagcagtcctaccggtgaagaggccaaagaatacaaa
ttcatgctgctggagaaagagaacgctcccgtcaaaaaggagacggagagactcatcatg
gccaaagatactggcaaacagttctcctctgctgccactgctattgcctattctgaggac
tcactgaagaaggagaagaagaaggtgtccggctttgtggagacagctacagccagaacc
acagaaacgaacgctggatccttgatgaaagtgtcaacgaaagacaaagcaacctatgca
gagatacacaaggacgagtctggaggaggtctgggcttctggtcctgctgctcctggtgg
aagtggctgttgggcctcctgctgggtcttctgctcctcctggggctcctcctgggactc
atcgccctggccgaagaagtcaaacgtcttaaagctcgtgtggatgccttggaacaagcc
tccagctcttcctcagcccattccagtcgcctctcctcctcctcaaacatcaacatcata
gaccctctggagtctgcatacatagacaagacctcctctccctcctctaccacactgctc
cgctctgataatggtatcaatctgggagtggcagcaggagcaggtccaggatcagctaat
ggaccaggccaagaccctgtagctctgcaaagggcagttcagcagatagtcaggactgag
ctgcagtccgatactgtacgagcaacacttgcacattcaatgaaaggagcgagaggagag
cctgggaccaaaggtgaccaaggtggtccaggagtcaaaggtgataatggattccctggc
ctaccaggtcctccaggtcagatgggccacagtggacaggagggcccgaggggacctaaa
ggaaatgcaggtgaagctggtgcagagggccccccaggtcagaggggccgagaaggacca
acgggatcacgtggagagcctggtcctccagggtttggagagaaaggggacaaaggttct
cctggtgaacctggaggccccggacctgctggcactgctgggcctgttgggcctaaaggg
tcagcgggtggtcagggtgctacaggtatcccaggaactcctggtccacagggtttccga
ggtgaagcaggtgctccaggaccgaaaggagagaagggaccagctggacctccaggaaat
aagggcgagccaggagagaaaggaccccgcggaacatcaggtgacccaggtcaaagagga
cttccaggaccagacggaacaaagggatccaaaggacccacaggtgctcccggggctgac
ggtgaaaaaggctctagaggtgacaagggattggatgggttgccaggtcccagaggacca
gcaggacctccaggagatacaggcctcccaggcattcccgggcttcaaggtccaccaggt
ataccaggtaatccaggtcagcctggaggtaaaggcgaagctggagaacctggtagaatc
atcaatgcagctggttccagttcggttgccatccccggacctccaggcagccccggtccc
gctggtgttgccggatcccctggactctcaggtcctgttggccctgctggtcttcctgga
acgcctggtcccaggggagaaaagggagaggaaggagagaagggagaccagggaaagcct
ggcattactgtacagactgtggaaaccacagagaaacgtgcacctgtggctagtcttcct
ggcccacctggccctccagggcccccaggagaaccaggtgcccagggtcttctaggtaag
ggtctcccaggtcctgaaggtcctaaaggagagccaggtgtaccaggtgttggtgtgccc
ggcccccgaggagataagggagagccaggtagctttgtgcccaactcaggaaccttcttc
gctggaccaccaggacctgctggcccaactggtcttccgggatcaccaggaccccagggt
taccaaggtgacccaggtcagcccggtttaccaggagttcccggagatcccggtgtcggt
ttccctggaccccagggacaacctggaggtccaggaccagaaggggacagtggacttcca
gggccccaaggtccagagggccccgaggggcaaccgggtccaaaaggtgaggctggcgtt
ccaggtgctccaggaatccctggctactccagtggtggatcatccaggagttcccctgga
gcaccaggtccacctggacctcccggggaacccggccgtgatgggccacctgggtctggg
gatggaacaccggacgtccgtcaatacatcacagaatacctcaagagcgatggtgtcagg
gagtacatgtcgggtcctccgggtcctccgggcgtaccggggccccctggtggtggatca
gtggagtcagtggatgaccttgctagtcgcgtcattgcatacatccagagtggaggtatt
gctagtggggtgcctggacctccaggcccgcctggcgctccaggtggaggcagtacatcg
ctaaatgacatcatcagccttctacagagggaggaagtgcgacactacatcgtcggtcct
cctggccctgctggacctcctggcatcccagggatcccatggagaggaggctatggcttt
aataccaatgaggtggctggacgagtcctcaatctaatgaatgagcagggtatggtgggc
atgctcggaccccctggacctcccggcccaccgggcctacctgggtcctacagtgacatc
tcttatcttctgcaaaatgctgaatacaaaggcgtcttgggtgctcaggggcctcctggt
ccacctggtgtcccaggccctgctggccctcaaggccccgccggtccttcaggacaggcc
ccctacagcagctctggatacaggctggaggaggtcaaggactacatacagagtgatggt
ataagagggggaatgtttgggcctccaggccccccaggtccccctggaccccagggacat
aagggagagcagggtagctctgggtacggccacgccttcgaccacaggaccagcgaggga
agaaggctggctgagactgagacagactactccaatatagcggtccgagtgactgactac
atcaagtaccatggtctgttgagggatgtggttgagaaccagtctcagctggagaagtca
caggttgttcaaggacccccaggaccccctggccctcccggtgcaccaggattcagccgt
gtgtttggttcccatagtaacgccactgaccttgtggaatacatcagagcccatggaaac
attgtgggaccccctggaaggccaggacagaaaggggacataggacatacaggtcacaaa
ggcgagagaggactagatggcatcccaggaaggacaggcctcaatggtctggagtggaaa
agggggggaaagggggagaaaggagaatacacacttgtgacgcacagaagaaagaggaat
gttggtgtttga
DBGET
integrated database retrieval system
