Salmo trutta (river trout): 115178823
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Entry
115178823 CDS
T08542
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115178823
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
115178823
3'-5' decay
Other 3'-5' decay factors
115178823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
zf-CCCH
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
PhoH
AAA_16
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
115178823
NCBI-ProteinID:
XP_029596027
Ensembl:
ENSSTUG00000032551
UniProt:
A0A674BV66
LinkDB
All DBs
Position
38:complement(16375715..16441543)
Genome browser
AA seq
2011 aa
AA seq
DB search
MADRRAEKSCEEASGSLARREYEVAVSHCTDALLVLGPPALPSPGTPASNPPNDTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAIRGEMATEYTDDNEEVRDGWQFRPPPRGVTSS
EEYTLCKRFVEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYMEA
LIEKWMNSLSPEKVLSDYLDGVNVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIAL
LYDAHRPHFSITAVSVGDAGAQRLQAAAEGCQEWTAGEETLAADNGMDHCVYTVVVGFST
EIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIVE
FSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKEV
SKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVL
LLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQFQ
LNRLPLCEMHYALDRIKDNGILFPDASLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAIT
TPLTIPLPPVLIIGPYGTGKTFTLAQAVKHILRQDDSRVLICTHSNSAADLYIKDYLHPY
VEAGNAHARPLRVYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLST
SQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSEF
SRERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPSH
KDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVS
PYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQ
LVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHEN
TSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQLAQHPHHHQHHHQHPHPQG
HTASKQPGPQQQQQRSPPKGKGQHANHTEHFLPEGFVQPNPAVLMGNPIRAFTPPLGGTP
GGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPSVPIQLPWPGYQNRFAMDPRI
MSHQAAMAYNLNLLQAQNRGSPIPYGGVAHPSPLGMGQQTSPDKELQADSTRNGKMDGCA
KSEQIRLQTPERKTSEMKDKPGECDPGGGRSLDSQTDGLGFPNAILHRKDNSSQRPLNYH
LAPPNPAFAPHPVGRAFPPQYPGVSRLPFRVPSQHPGGGPAMGQPNQHHSAQLSPAYDSG
RHNPSFFGGVMASHRVVPETEEEGPEEMGNSMRSQMGHQGGHHPALSQPSRVNSFGEENQ
EGGLGDGMDPLALEALSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQLL
ARANWRMSAGMEDEAGGPPFTRFPGLLREMPPQDQPDPRDLAEMQPPPQSRLLQYRQVQS
RSPGDPSSPSSATSNHTGPFPPGPYPGRDPTSHELDLLNNPGLQQHPGNQLYNPNAYPHQ
LGHSTTPPPQVKYLLQEAQWPHGGAGVAQNHMLAQGQGFPYGLPIMAHPSRQEQVHLMQL
HHQQQQHHQQQQQQQQQQGQGPGQEPYHPLSPRTTGATALHNVEEYEPRGPGRPLYQRRI
SSSYPDEGSPANAAAMAQQQPQPCPGDPQEHPHQHPHSHQHTHQHPHAPYGYPPPELWPG
NGGGPGPFQNIPCNGASTLVQHQHRDLLVASKALRQAAEEQMKAEAAAAVAAAQPPAHSL
QHLGQFPPLMPNSKQQPQQQQQAPPEPGQGPGGPQNPGKPPTMSYASALRAPPKPRARPE
QVKKHSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcggatcgttagccaggcgg
gagtacgaggtggcggtgagccactgcacagatgcgctgctggtcctcggccccccggcc
cttcccagccctggtacccccgcatccaacccccccaacgacacggttacccccctccgc
agccgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgttctggccgaggagctggccaagggagacgggtcgtttcag
gccagtctgcgctgcatgctgctggacggcagcctgcacgaagtggctggcctcctctcc
aagtccctgtttggggagcctctgaacggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccattcgtggcgaaatggctacagaatatacagacgac
aacgaggaagtacgggatggatggcagtttcgccccccgcctagaggagttaccagcagt
gaggagtacacgctgtgtaaaaggttcgtggagcagggcctgtgtcgctacggtgcccag
tgcacgtcggcccactcccaggaggagctgatggagtggcagaaacgctacgcctcgcgc
ctcatccgcctcaagcagcagcaggagagcaagcacttcaccgagaactacatggaggcg
ctcatcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttggac
ggcgtcaacgtggaacacagctccaacctctccgtaacggtcaccaccaagaaatcagct
cactcctggaccttctccctgttctgcaagcctgtgaggaagctgtaccgcatcgccctg
ctctacgacgcccaccggccccacttctccatcacggccgtgtcggttggcgatgccggc
gcccagcggctgcaggcggcggccgagggctgccaagagtggacggcgggcgaggagacg
ctggcggccgacaacggcatggaccactgcgtctacacggtggtggtgggcttcagcacc
gagatcttcggcaccttccgccagaccatcgtcttcgactttggctcggagcccgtgctg
atgcagcgcatcatggtggacgccgcctccatagaagacctggagcacctaatgcaagcc
aggcagcagctcctgatgacggccaagcgctgggacccgtcctgcaagactatcgtggag
ttcagccccaacgagactgtggacctggaccgcagcctgctggcccgctaccagatcccc
ctgtcggccgaccagctcttcacccagtcggtcctggacaagaccctgaccagggacaac
taccaggcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaagtc
agcaagttcaacatcaaagtcaacctccagctggtcaccagcttcatgctgacgggcatc
tcgggtggcgccaagtacgcccagaacggacagctctttgcccgcttcaagctgactgag
acgctgtcggaggacacgctggcgggccgacttgtcatgaccaaggtgaactctgtcttg
ctgttgcccctggcccgccaggagtggtgcagccagccccctggggtcaaggagcgtgtc
tatgaggcctgcatcgaagagaagaccaaggactacattttcctgcggatatgcaaggac
tgctgcgaggagctggggttgatacctgatagggaactgcaggtggagctgcagtttcag
ttgaaccgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaacggc
atcctgttcccagacgccagccttacacccaccatcccctggagccccaacaggcagtgg
gacgagcagctggacccgcgtctcaacgccaagcagaaggaggccatcctggccatcacc
acgcctctcaccatccccctgccccctgtgctcatcatcgggccctacggcacgggcaag
accttcaccctggcacaggctgtcaagcacatcctcaggcaggacgacagcagggtcctc
atttgcacccattccaacagtgcagctgacctgtacataaaggactaccttcatccatac
gtagaagcgggcaacgcgcatgcaagacctctcagggtatacttcaggaaccgctgggtg
aagactgtccacccgttggtgcagcagtactgcctgatctctaacacacagtacactttc
cagatgccagagagggaggacatcctcaggcaccgcgtggtggtggtcaccctcagcacc
tcccagtacctctgccagctggacctggagccagggcttttctcccacatcctattggac
gaggcggcccaggccatggagtgtgagaccatcatgcctttcgcgctggccagcaaaagc
acccgcatcgtgctggctggagaccacatgcagctcagtccgtttgtgtacagcgagttt
tctcgagagcggaacctgcatgtgtcgctgttggaccggctgtacgagcactacccagcc
gagtttccctgccgcatcctgctctgtgaaaactaccgctcccacgaagcgatcatcagt
tacacgtcagaactgttctacgacgggaagctgatggccagcgggaagcagccgtctcac
aaggacttctacccgctgaccttcttcacggcgcgcggggaggacgtccaggagaagaac
agcacggcctactacaacaacgcagaggtgtttgagatcgtggagcgggtggaagagatg
cgcaagaagtggccggtggcgtggggcaagctggacgagggcagcatcggtgtggtgtcg
ccctacgccgaccaggtattccgcatccgcgccgagctccgaaagaagaggatgcacgag
gtcagcgtggagagggtgctcaacgtccaaggtaagcagttccgggtgctcttcctgagc
acagtgcgcacgcggcacacctgcaagcacaaacagacggccatcaagcgcaaggagcag
ctggtggaggattcgacagaggacctggactacggcttcctgtccaactacaagctgctc
aacacggccatcactcgcgcccagtctctggtggccgtggtgggagaccccatagcgctc
tgctcggtgggccgctgcagaaagttctgggagaagttcatctccatctgccacgagaac
accagcctgcacggcatcacctttgagcagatcaaggcccagctggaggcccttgagctc
aagaagacctacgtgctcaacccgctggcgcccgagttcatcccccgcgccctgcgtccc
cagctggcccagcacccccatcatcaccaacaccatcaccaacacccacacccccaggga
cacacggccagcaagcagcccgggccccagcagcagcaacagcggtctcctccaaagggg
aaaggtcaacatgcgaaccacacggagcacttcctacctgaaggatttgttcaacccaac
cctgcggtgttgatgggtaaccccatccgggcgttcacgccgccactggggggcacccct
ggcggcatgggcaagtcccccagtcccgtgcagaggatagacccccacacgggcgccagc
atactttacgtgcccgccgtctacgggggcaacatggtcatgtccatgccactgccctct
gtccccatccagttgccgtggcccggctaccagaaccgctttgccatggacccacgcatc
atgagccaccaggcggccatggcctacaacctgaacctcttgcaggcccagaaccggggc
tcgcccatcccctacggcggagtcgcacacccttcccccttgggcatgggccagcagact
agtcccgacaaggagcttcaggctgattccaccagaaacggtaaaatggacgggtgtgca
aagtccgagcagattcggctacagacaccagagaggaagacctcggagatgaaggacaaa
ccgggagagtgtgatccgggcggtggccggagtctggactctcagacagacggactgggc
ttccccaatgccattctccaccgcaaggacaactcaagccaaagacccctcaactaccac
ctggcgccccccaacccggcctttgccccccatcccgtgggccgggccttccccccacag
taccccggcgtgtccaggctcccctttagggtgccgtcccagcacccaggtgggggcccg
gccatgggccagcctaaccagcatcactcggcccagctatcaccagcctacgacagcggc
aggcacaacccctccttctttggtggggtcatggcctcccacagagttgttccagagact
gaagaggaggggccggaggagatggggaattccatgaggtcccagatgggccaccaaggg
gggcaccacccggccctgtcgcagcccagccgagttaacagctttggggaggagaaccag
gaaggaggcctgggagatgggatggaccccctagctctggaggccctgagccagcaggca
cggctgggccagtggggtgagcccgggcccttcctccagggcggtgtggccttccctctg
ccccagcagctggcccatctggcccagcccggcctagctcgcttcccccctcagctgctg
gcacgggccaactggaggatgagcgccggtatggaggacgaggctggcggaccgcctttc
accaggttcccaggcctactgcgagagatgcccccccaggatcagcccgatcccagggac
ctggcagagatgcagccccctccccagtcccgcctgctccaataccgccaggtccagtcc
cgctccccaggagacccctcctccccctcgtctgcaacctccaaccacactggccccttc
ccccctggcccctatcctggccgagaccccaccagccacgagctggacctcctcaataac
ccgggtctccagcagcacccggggaaccagctctacaaccccaacgcctacccccaccag
ctgggccactctactaccccgcccccgcaggtcaagtacctcctccaggaggcccagtgg
cctcacggcggagctggcgttgctcagaaccacatgctggcccagggccagggcttcccc
tacgggctgcccatcatggcccaccccagtagacaggagcaggtccacctcatgcagctc
caccaccagcagcagcagcaccaccagcagcagcagcaacagcagcagcagcagggtcaa
ggcccaggccaggagccctaccaccccctctcccccagaacaacaggtgccaccgccctt
cacaatgtagaagagtatgaacccaggggtcccgggcggcccctctaccagcggcggatc
tcctccagctacccagacgagggatcccccgccaacgccgccgccatggcccagcagcag
ccacagccctgcccgggagacccccaggagcacccccaccaacaccctcactcccaccaa
cacactcaccaacacccccacgccccctatggctaccccccgcccgagctgtggcccggc
aacgggggtggccccggcccgttccagaacattccatgcaacggagccagcacactcgtt
caacaccaacaccgggatctcctagtagcttccaaggccctgcggcaggcagcagaggag
cagatgaaggctgaagcagcagcagcagtagctgcagcccagcctcccgcccactccctc
cagcacctcggacagttcccccctctcatgcccaacagcaagcagcagccgcagcagcag
cagcaagcccccccagagcccggccagggccccgggggcccccaaaaccctggaaaaccc
cccaccatgtcctacgccagtgccctccgcgccccacccaaacccagagctcgccccgaa
caggtcaaaaagcacagcgacccactttccctactccaagagctcagcataggaagttca
aatggtagcaacggatactattcctattttaaatga
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