Salmo trutta (river trout): 115178890
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Entry
115178890 CDS
T08542
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115178890
09122 Translation
03013 Nucleocytoplasmic transport
115178890
03015 mRNA surveillance pathway
115178890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115178890
03041 Spliceosome [BR:
stru03041
]
115178890
03009 Ribosome biogenesis [BR:
stru03009
]
115178890
03012 Translation factors [BR:
stru03012
]
115178890
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115178890
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115178890
mRNA cycle factors
Stress granule specific factors
115178890
Spliceosome [BR:
stru03041
]
Complex C
Other components
EJC/TREX
115178890
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
90S particles
Helicases
115178890
Translation factors [BR:
stru03012
]
Eukaryotic type
Initiation factors
eIF-4
115178890
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
115178890
NCBI-ProteinID:
XP_029596156
LinkDB
All DBs
Position
38:19749683..19759670
Genome browser
AA seq
406 aa
AA seq
DB search
MEVATVPRTRRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagccaccgtaccgcgcacgaggcgtctattgaaggaggaagacatgaccaag
atcgagtttgagaccagtgaggaggtcgatgttactcctaccttcgacactatgggccta
cgagaggatctcctccgtgggatatacgcatacggattcgagaagccttccgcaatccaa
caaagagcaattaaacagatcatcaagggtagagatgtcattgcacagtctcagtcagga
acaggaaagactgccacattttgcgtatcagtgctgcagtgtcttgacatccaggtgcgt
gaaacccaagcgctgatcctggctcccaccagagagttggctggacagatacagaaggtg
ctcctggccttaggtgactacatgaacgtccaatgtcattcctgcatcggagggacaaac
gtgggtgaggacatccgcaaactggactatggccagcacgtggtagcagggacccctggg
agagtgtttgatatgatccgcaggagaagtttgaggacgcgtgccatcaagatgctggtg
ctggacgaagcagacgaaatgctcaacaagggtttcaaagagcagatctacgacgtgtac
cggtacctgccccccgccacccaggtctgtctgatcagcgccacgctgccccacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgag
ttgactctagagggcatcaagcagttcttcgtggcagtagagagggaggagtggaagttt
gacaccctatgtgacctgtatgacaccctcaccatcacacaggctgtcatcttctgcaac
accaagcggaaggttgactggctgactgagaagatgagggaggccaacttcactgtttcc
tccatgcacggagacatgccccagaaggagagagagtccatcatgaaagagttccggtcc
ggtgccagccgagtgcttatctccactgatgtgtgggcccgaggtctggacgtgccccag
gtatccctcatcatcaactacgacctgcccaacaacagagagctgtacatccacaggatt
ggccgatcgggtcgttacggccgcaagggtgtggccattaactttgtgaagaatgacgac
atccgtattctccgtgacattgagcagtactattccacacagatcgatgaaatgccaatg
aacgtggctgacctgatctaa
DBGET
integrated database retrieval system
