Salmo trutta (river trout): 115178910
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Entry
115178910 CDS
T08542
Name
(RefSeq) RNA exonuclease 5-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115178910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
stru03009
]
115178910
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-60S particles
RNases
115178910
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNase_T
Phosphodiest
Motif
Other DBs
NCBI-GeneID:
115178910
NCBI-ProteinID:
XP_029596198
Ensembl:
ENSSTUG00000022347
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Position
38:29459716..29472306
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AA seq
885 aa
AA seq
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MDPQVCLERKGEPSPTPESSKQVKETELNGVPESEHRSGSRPPRLSLPFDRLQEPVTLKD
LTELLQFAALGNTGGLKQPSWCRLHHQRKVSGVSVILLEGLSQAHFYRHYLHFKHLRTKY
TSRHSYTPSPGNVISGIFSSEVVNNSPADALGDQKSAQPEGGMRLHPVIRKFGLETRGLT
GYLLTQEDMIKKHFPVRGMPGSEGFVCTDSDDCVTDSSPLYGLDCEMCLTEWGNELTRIS
LVDSRGSCVLDELVKPPNRILNYLTQFSGITRAMLQPITTTLREVQSKLKKVLPRDAVLV
GHSLDNDLMALNLIHPHVIDTSLLYRREFGQRFKLKVLAETVLKKQIQTEERKGHDPTED
AQAALELAQYFIHTGPRQVVELYCEELWGGSPTMYQPPVNRATSTHNNNRFAQALKSSGQ
SAVVIGKRADITLDLSNQQWHSSDREVLSSFKRRLESHSFSVVQLSSFSDHLMSMISTDQ
HYHTMSQRLREMCAVFAGPLPSDYTERDVRRLFRSCGNVQAVRLLNATQRVHAEVEFELL
EGAVLAVEMLNGTLLHTRHILKVQRPLKESMLDLDVFLSCLQDDPLNANVIYAAGLKANA
KTAQLAAKVNGTGLNANAATEVNETGLNANIAALPAKVNRARLHAKANHSGLLEKVNGTF
LNAKAKLAEVNGPGLHAKAKFAKLAELSAEVNSTLLKAKTMLAEIAAEANVGARLHAKTA
GLCEEDLCRAFGKYGTVQGVILPAKHSGKQKRMRHAFLKYDSPDTVDAVLSSPVELWDRK
VSTLRALTPPHLRSWITMMTTTGSDRETPDESSQETGREEQEVACVMRKLDRRVGKLFRS
LPDNTLSIVLLPGHNSSHGDGLCFLEVKQGSAALSDHAHNLMLPA
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggatccacaagtctgtctcgagagaaagggggaaccttccccaacaccagagagcagt
aaacaagtgaaagagacagaacttaacggagttccagagtctgagcaccgttccggttcc
cgacccccacggctctctctgccgtttgaccgtctccaggaaccggtcacgttgaaagat
ctgacggaactgcttcagtttgctgctctggggaataccggtgggctgaaacaacccagt
tggtgtcgcctccaccaccagaggaaggtatccggggtgagcgtgatccttctagaagga
ctgagccaggcccacttctacagacactacctgcacttcaaacacctccgcaccaagtac
acctctagacacagttatactccatcgcctggcaacgtgatttctggaattttcagcagt
gaagttgtcaacaatagtcctgctgatgcgctaggagaccagaagagtgctcagccagag
ggaggtatgcggttgcacccagtgatcaggaagtttggtctggagaccagagggctgact
ggatacctcctcacccaggaggatatgatcaagaaacacttccctgtccgcggtatgcct
ggcagtgagggctttgtgtgtacagacagtgatgactgtgtgactgacagtagtcctctc
tatgggctggactgtgagatgtgtctgacagaatggggcaacgagctgacgcgtatttct
ctagtagacagcagagggagctgtgttctggacgagctggtcaaacctcccaaccgcatc
ctcaactaccttacacagttctctggtatcacccgtgcaatgctgcagccaatcaccacc
accctaagagaagtccaatcaaagctcaagaaagtgttgccccgggacgcggtcctggtt
ggccactcccttgacaacgacctcatggccctgaacctgatccacccccatgtgattgac
acctccctgctgtacaggagagagtttggacagaggtttaaactcaaggtgctggctgag
accgtgctcaagaagcagatccagacagaggagaggaagggtcatgaccccacagaagac
gcccaggctgccctggaactggcccagtacttcatacacactggaccacgacaggtagtg
gagctgtattgtgaagagctgtggggtgggagtcctaccatgtaccagcctcctgtcaac
agagcaacatctacacacaacaacaacaggtttgcccaggccctgaagagttctggccaa
tcagccgtggttatagggaagcgtgctgacatcaccctggatctatccaatcagcagtgg
cacagctcagacagagaggtcctgtcttcctttaaaagacgactagagtctcactcgttc
agcgttgtccagttgtcttccttctctgaccatctgatgtctatgatctctactgaccaa
cactaccacacgatgtctcagcgtctgagagagatgtgtgcggtgtttgcagggccgttg
cctagcgactacacagagagggatgtgaggaggctgttcaggagctgtggaaacgtacag
gctgtcaggctgctgaatgctactcagagggtgcatgcagaggtagagtttgagctgctg
gagggagctgtgctggctgtagagatgctcaacggaacactgctacacacccgacacatc
ctcaaggtccagagacctttaaaggagtccatgctggatctggacgtcttcctgagttgc
ctgcaagatgacccgctaaatgctaacgtcatctacgccgcagggctaaaggctaatgct
aaaacagcacagcttgcagccaaagtcaatgggactgggctaaatgctaacgcagcaact
gaagtcaatgagactgggctaaatgctaacatagcagcactcccagctaaggtcaataga
gctaggctacacgctaaagcgaaccattcagggctcttagagaaagtcaatggaactttt
ctaaatgctaaagctaagctagctgaagtgaatggacctgggctacatgctaaagctaaa
tttgctaagctagcagagctctcagctgaagtcaatagcactctgctcaaagcgaaaact
atgctagcagagatagcagccgaagccaatgttggagcgaggctacatgccaagactgcc
ggactctgtgaagaggacctctgcagggcctttggaaagtacggaacggttcagggcgta
attctacctgcaaagcactctggaaaacagaaacgtatgagacatgctttcttaaagtat
gatagtcctgacactgtggacgcggtcctcagctcacctgtggaactctgggacaggaag
gtgagcactctcagagccctgactccgccccacctgcgctcctggattactatgatgacg
acgactgggtctgacagagagacaccggacgaatcgtcacaggaaactggaagagaggaa
caggaagtggcgtgtgtgatgaggaagttggaccggcgcgtggggaagctgttcagatct
ctacctgacaacaccctcagcatcgtactgctgcctggtcacaacagttcccatggcgat
ggtctgtgtttcctggaggtcaaacaggggtcagcagcactcagtgaccatgcccacaac
ctgatgctacctgcatag
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