Salmo trutta (river trout): 115179190
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Entry
115179190 CDS
T08542
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
stru
Salmo trutta (river trout)
Pathway
stru03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115179190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115179190
03036 Chromosome and associated proteins [BR:
stru03036
]
115179190
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115179190
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115179190
PBAF complex
115179190
GBAF(ncBAF) complex
115179190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
115179190
NCBI-ProteinID:
XP_029596421
Ensembl:
ENSSTUG00000001731
LinkDB
All DBs
Position
3:complement(54629406..54647164)
Genome browser
AA seq
1105 aa
AA seq
DB search
MATAATAAGGTGSGGPAVGPMGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVPDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPISEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDDSVVSGGK
EEEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKS
KSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDA
ESRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMLNFPEKGKDKPSDMQNFGL
RNDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFL
RLPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEF
SRVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTAPPSLSVIV
EPAETEKMDTDSDSQQPDKAESKDEAEKPSESAEKLAEGEKVKSETAEPSEREERESEGG
EGKATADKDKEVAMETSEEDKEKEEQGAMEEEERKKLVPDGGDGNIATAAAAALASAATK
AKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQ
AFHMEQLKYAEMKARQQMEQQQANAAAQGPAPHHGPPGPGMHHGPPHHGPPPAMHSGHGP
PGPGFHPMGPHHPQQTGPMGGPGQPLPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYPGPS
PVQADGMPPASVGPQAAAPARVADS
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagtcggccct
atgggcgtcggtactgcagtgggccgtaagaaagatggaggtccttcctcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacattac
aaaaagtatgtacaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcgggcggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcacatcctgggc
tccacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtagagatgttcttgaatgtagagaagaccctggttcagaataac
tgcctgactcgaccgaccgtattcctggtgcctgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagcgacaccagggctccatcactgaggacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagcgacgtggaaggggatgtggaggacccacccatctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacaccgacgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccgaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtcccgcaagaaaggcggc
aagaaggggaaccctgggtctcactggaagcgtcgtggacaccgtggcgaggaggaggag
gaggaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggag
gaggttactttgcccaagaacgtgaaccctaagaaagatagcgagaacaccccagtgaag
ggaggggcagtggctgatttggatgatctggaggatgactctgtggtctccggaggcaag
gaggaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaac
gtgaccgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaac
tgtatccatgagattgagaggcgtgcactgccggagttcttcaacggcaagaacaagtcc
aagtccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaac
ccccaggagtacctgacctccacctcctgccgcaggaacctgaccggagacgtgtgtgcc
gtcatgagggtgcatgccttcctggagcagtgggggctggtgaactaccaggtggatgct
gagagccggcccctccccatgggccccccgcccaccccccacttcaacgtgctggctgac
accccctctggcctgacgccgatgcaccaccggcccccacagatcccctccggccagcag
atgctcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctg
cgtaacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggag
tggaccgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactgg
aacaaggtgtcggagcacgttggttcgcgcactcaggacgagtgtatcctgcacttcctg
cgtctgcccatcgaggacccctacctggagaactctgagtcgtccctgggccccctggcc
taccagcctgtacccttcagccagtcaggcaaccccgtcatgagcaccgtggccttcctg
gcctccgtggtggacccccgtgtggcctccgccgccgccagggcagccctggaggagttt
agccgtgtgcgtgaggaggtgccagcagagctggtggaggctcatgtgaagaaggtgcag
gaggcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatc
gcaggaaccgcccccgaggagcccgagaagaccgcccctccctctctctctgtcattgta
gagccagcagagaccgagaagatggacacagactccgactcccagcagcctgacaaggct
gagtctaaggacgaggcggagaagcccagtgagtctgctgagaagctggccgagggagag
aaggtgaagagcgagacggccgaaccgtctgaacgggaggagagagagagtgagggagga
gagggcaaggctacagcagacaaagacaaggaggtggccatggagacctcagaggaggac
aaagagaaggaggagcagggagcgatggaggaagaggagaggaagaagctagtgccggac
gggggggatgggaacattgccactgcagccgctgctgccctcgcctcagctgccaccaag
gccaagcacctggcggcggtggaggagaggaagatcaagtctctggtggctctgctggtg
gagactcagatgaagaagctggagatcaagctcagacactttgaggagctggagaccatc
atggaccgagagaaagaggctttggagttgcagaggcagcagctgctgacggagcgccag
gccttccacatggagcagctgaagtatgctgagatgaaggcccgccagcagatggagcag
cagcaggccaacgcagcggcccagggccccgcaccccaccatggccccccggggccaggc
atgcaccacggacccccccaccacggaccccctcccgccatgcactccggacatggcccc
cccggccccgggttccaccccatgggtccccaccacccgcaacagacaggaccaatggga
gggcccggtcaacccttaccaggacgcatgatgcctggcggcccccccactggcagcatg
cctcccatgatgggtccccgccaccctggcgctcccaacggcatgtaccctggcccctcg
cctgtacaggctgatggtatgcccccagcgtctgtgggacctcaagcggcagccccagca
cgagttgctgacagctaa
DBGET
integrated database retrieval system
