Salmo trutta (river trout): 115179490
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Entry
115179490 CDS
T08542
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115179490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115179490
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
115179490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
115179490
NCBI-ProteinID:
XP_029596904
Ensembl:
ENSSTUG00000034005
LinkDB
All DBs
Position
39:11268432..11286288
Genome browser
AA seq
943 aa
AA seq
DB search
MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQEESVLQKDACIESNLCSFP
HYLLPDTNVVLSQIDILEDPLIKNAIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTF
TNEHHRETYIEREQGESANDRNDRAIRISTKWYSDHLNNKGLKVVLLTNDRGNKEKAEEA
GLLTYRCEEYVKSLIANPELVDRLALTNDDKNEITSSKVLFSEHLPLSRIQSGIKSGTFQ
QGTFRASRDNYLEATVFVHGEGDDSTEVLIQGLQNLNRAVHQDLVAVEILPLNQWVAPSS
VVLQDEGPKEDDVTEEEEAELKSGLSGVASRKPTGRVVGIIKRNWRPFCGMLFLSQIKEA
TRHLFTPADRRIPRIRIETRQAATLAGQRIMVAIDGWPKHSRYPNGHFVRSLGSAGDKET
ETEVLLLEHDVPHQDFSQAVLSFLPKMPWNITEEDMAVREDLRNLTVCSVDPPGCTDIDD
ALHCRDLPNGNQEVGVHIADVSHFIRPGNAMDLEAANRGTTVYLTGRRIDMVPELLSSNL
CSLRSSVERLAFSCIWEINDKAEIVQTRFTKSVINSKASLTYAEAQMRIDDANMNDDTTK
SLRGLNRLAKILKKRRIEKGALTLSSPEVRFHIDSETHDPIDLQTKELKETNSMVEEFML
LANISVAQKIYDEFSECALLRKHPAPPPSNYDILNKAAKSKDLVIHTDSAKALADSLDAA
QVDGFPYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIRRYSDIIVH
RLLAVAIGADSTYPDLMDKHKQSALCNNLNYRHKMAQYAQRASVAFHTQLFFKSRGILNE
EGFILFVRKNAIIVLIPKFGLEGTVFFQNKDKPSPKLIFNEEAPSLTVEGHSFNMFDKVK
VTISLDASNVQHQKIRMSLVEPVISGVSVAPSEPEAKRAKLDR
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaatcaaaaactttcgtaaagaaaacccgatcaggcgggatcatgaaaatagtc
cgtgagcactacctgcgagacgacatttggtgcgggagtgaagtttgtacagaatgcaag
caagaagagtctgtgttgcagaaagacgcttgcattgaaagcaacttgtgttctttccca
cactatttactcccagacacaaacgttgtgttgagccagattgatatcctggaggatccc
ttgatcaagaacgcgatcattctgcagactgtactccaagaggtccgccacaggagcgct
cccatctacaagcgattgaaagacatccttcacgacaaggaaaaacacttttacactttc
actaacgaacatcacagagaaacgtatatagagagagagcagggggaaagcgccaacgat
cgtaatgacagagccatccgcatatctacaaagtggtacagtgatcacctgaacaacaag
gggttaaaggttgttttgctgaccaatgaccggggcaacaaggagaaagcagaggaggcc
ggcctgctcacatacagatgtgaggagtacgtcaagagtctgatagccaaccctgagctg
gtggatcgactggctttgaccaacgatgacaagaatgagatcaccagcagtaaggtgttg
ttctcggagcacctgcccctgtctaggatccagtctgggattaagagtgggaccttccaa
cagggaacgttccgggctagcagagacaactacctggaggctactgtgtttgtccacgga
gaaggagatgacagtacagaggttctcatccaaggcctacagaacttgaacagggctgtc
catcaggacctggttgctgtggagatcctgcctctgaaccaatgggtggctccgtcctct
gtggtgctgcaggatgaggggcccaaggaggatgatgtcacagaggaggaggaggcagag
ttgaagagtggtctgtcgggggtggcgtcacggaagcccacaggcagggtggtgggcatc
atcaagaggaactggagacccttctgtggcatgctcttcctgtcccaaatcaaagaggcg
acccgtcacctcttcaccccagctgaccgtcgtatccccaggatccgtatcgagacgcgc
caggcggccacgttggcaggacagaggatcatggtggccatcgacggctggcccaagcac
tccagataccctaatggccattttgttcgtagcctgggaagtgcaggggacaaggagaca
gagacggaggtgctactgctggagcatgatgtccctcaccaggacttctcacaggccgtc
ctcagtttcctccccaagatgccctggaacatcacagaggaggacatggctgtgagagag
gacctgaggaacctgactgtctgcagtgtggatcctcctggctgtacggacatagatgat
gctctgcactgcagagacctgcccaatggaaaccaagaggttggtgtccacattgctgac
gtgagccacttcatccgtccaggcaacgccatggacctggaggctgcaaacagaggcact
acagtctacctgactggaaggaggatcgacatggttcctgaactgctgagctccaacctg
tgttctctacgatccagtgtggagaggctggccttctcttgtatatgggagatcaacgac
aaggctgagatagtccagaccagattcactaaaagtgtcatcaactccaaggcctccctg
acgtacgccgaggcccagatgaggattgatgacgccaacatgaatgatgacaccaccaag
agcttacgaggtctgaacagactagccaagatcctgaagaaacggaggatagagaaaggt
gcgttgactctctcctcgcccgaggttcgcttccacatcgacagtgagactcacgacccc
atagacctacagaccaaggaactcaaggagaccaactcgatggtggaggagttcatgttg
ctggccaacatttcagtagctcagaagatttatgatgagttctcagagtgtgctcttctc
aggaagcaccccgcccctcctccatctaactacgacatcctcaacaaggctgccaagtct
aaggacttggtgatccacacggactcggccaaggctctagctgactctctggacgcggcc
caggtggacggcttcccttacttcaacaccttgctgcgtatcctagcaacacgctgcatg
atgcaggctgtgtacttctgctccgggatggacagtgacttccaccactatggactggcc
tctcccatctacacacacttcacctcacctatcagacgatactctgacatcatcgtgcat
cggctgctggctgtagccattggagcagacagcacctacccagacctgatggacaaacac
aagcagtctgccctctgcaacaacctcaactacagacacaagatggctcagtacgcacag
agagcctctgtagccttccacacacagctgttcttcaagagcagaggcatcctgaatgag
gagggcttcatcctgtttgtgaggaagaacgccatcatcgttctcatccctaagtttggt
ctggagggaacggtgttctttcagaacaaagacaaacccagccccaaactgatcttcaac
gaagaggctcctagtctgacggtggagggccactccttcaacatgtttgacaaggtcaaa
gtgaccatcagtctggacgcgtccaacgtccagcaccagaagatcaggatgtccctggtc
gaacctgtgatctctggagtgagtgtcgcaccgtctgaaccagaagccaagagagctaaa
ctggaccgttga
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