Salmo trutta (river trout): 115179491
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Entry
115179491 CDS
T08542
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
stru
Salmo trutta (river trout)
Pathway
stru04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115179491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115179491
Membrane trafficking [BR:
stru04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115179491
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Motif
Other DBs
NCBI-GeneID:
115179491
NCBI-ProteinID:
XP_029596905
Ensembl:
ENSSTUG00000033880
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Position
39:11233198..11245110
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AA seq
897 aa
AA seq
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MMLLVDVCCAFKMSVKAFELVPAVERELLMGDKARINIECIECCGKHLYVGTNDCFIHHF
LLEEHATTKGMLSYTVQKLLFRYLGLKKPVEALKAASALERIIVLCDATVSVVDMITLEP
VPSGGAKIKGVAAFCVNENPVNGDPFCVEIGVISARRRTVQIYMVYEDRVQLVKEVNTPE
QPCAVSLDGYFLCLALSTQYMILNYSTGAAQDLFPYDSEERKPIVKRIGREEFLLAAPGG
LGMFANAEGISQRAPVNWSESVMGAAVCFPYVVALDEGFVTVHSMLDQQLKQTLSFRDGH
ILQDFEGKVVLASTKAVYVLVPLPLERQIQELLAGHRVEEALTLTEGARRNIPKDKFQIL
HKRILQQAGFIQFGQLQFLEAKEHFRTGQLDVRELISLYPLLLPASSSFTRCHPPLHEFA
DLNHLAQGDQEKVQRCKRFLITYLGEVRSTEGANGCREDVDTALLKLYAEQDHESLLDLL
ASPNACLLAESAPWLEKHHKYFALGLLYHYNGQDSAALQLWVRVVNGDLQDSTRSDLYEY
VVDFLSFCSNPDLVWKYADWALQRDQTIGVQIFTRRPVGQDQVKEQKDQVKEQKDQVKDQ
VNPDDVITYLGKHSQALLLYLEHLVLGRRIQKEKLHTHLAVQYTDRVLSLLSQSPTADQQ
VSLARDKLQLLLRESSLYRVQLLLGKIQEYDQLFLERATLHGKLEEHDKALHILVHQLKD
FPAAEAYCVRGSASRDPAYQQRLLHLLLGVYLDRDLPSSTGTGELEMAAVDLLNRHGELF
DAVRVLDLLPEGWSLQLLRPFLGRALRGSMHACRTSQVALGLARSENLQLQHDRLKQRRS
PVLVSEKKGCVLCHNTFSEPDCVCLPGGVPVHTHCAAQRVVRDSPTRRQLANSNNHT
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgctagtagatgtgtgctgtgccttcaagatgagtgtgaaggcatttgagctg
gtccctgccgtggagcgggagctcctgatgggagacaaggcccgcatcaacattgagtgc
atcgagtgctgcggcaagcacctgtacgtgggcaccaacgactgcttcatacatcacttc
ctgctggaggagcatgccacgaccaaggggatgctatcctacaccgtccagaagctgctg
ttcaggtacctgggcctgaaaaagcctgtggaggccctgaaggccgcctcagcgttagaa
cgcatcattgtgctctgtgatgctacagttagtgttgttgacatgatcaccttagaaccc
gtgccttcgggcggggccaagattaagggcgtggccgcgttctgcgtcaacgagaacccg
gtgaatggggacccgttctgcgtggagatcggggtgatctcggcccggcggcgcactgtg
cagatatacatggtgtacgaggacagggtgcaactggtgaaagaggtcaacacaccggag
cagccatgtgcggtcagtctggacggttatttcctgtgcctggccctctccacgcagtac
atgatccttaactacagcacaggggccgcgcaggacctgttcccctacgacagcgaggag
aggaagcccatcgtcaagaggatcggcagggaggagttcctcttggctgcccccggtggc
ctgggtatgtttgccaatgcagagggtatatcccagcgtgccccagtgaactggtcagag
agtgtgatgggagcagcggtgtgttttccctatgtggtggcgctagacgagggcttcgtc
accgtccacagtatgctggaccagcagctcaaacagaccctctccttcagagacggacac
atcctacaggactttgaaggtaaggtggttctggcctccactaaggctgtgtacgtgctg
gtgcccctacctctggagagacagatccaggagctgctagctggacacagagtagaggag
gccctcacccttacagagggagccaggaggaacattcccaaagacaagttccagatattg
cacaaaagaatcctccagcaagcaggattcatacagtttggacagcttcagtttttagaa
gcgaaagaacacttcaggacaggtcagttggacgtccgggagttgatctccctctaccct
ctcctcctcccagcctcctcctccttcacccgctgccacccgccgctccacgagttcgcc
gacctcaaccacctggcgcagggggaccaggagaaggtccagaggtgcaagaggttcctc
atcacgtacctgggtgaggtgcgaagcacggagggggctaatggctgccgggaggacgtg
gacacggctctgttgaagctgtacgctgagcaggaccacgagagtcttctggacctgctg
gcctcccccaacgcctgtttactggcagaaagcgccccctggctagagaaacaccacaag
tattttgcactaggcctcctctaccattataacggacaggattcagctgctctacagttg
tgggtgcgggtagtgaatggggaccttcaggactctaccaggtctgatctgtatgagtac
gttgtggacttcctgagtttctgttccaacccggacctggtgtggaaatatgcagactgg
gccctgcagagagaccagacgataggggtgcagatcttcaccaggaggccggtgggtcag
gaccaggttaaggagcagaaggaccaggttaaggagcagaaggaccaggttaaggaccag
gtgaacccagatgacgtcatcacgtacctggggaaacacagccaggctctgctgctgtac
ctggaacacctggtgctgggccgacggatacagaaagagaagctccacacccacctggca
gtgcagtatacagacagagtcctgtctctcctgtctcagtcccccacagcggaccaacag
gtgtctctagcacgggacaaactccagctcctcctcagggagtccagcctgtaccgcgtc
caactactactgggtaagatccaggagtatgaccagttgtttctggagagggccacgctc
cacgggaaactagaggagcacgataaggcgttacacatcctggtgcaccagctcaaagac
ttccccgctgctgaggcctactgcgtgaggggttctgcctcccgggacccggcctaccag
cagcgcctcctccacctccttctgggggtctatctggaccgggaccttcccagtagtacc
ggcaccggggagctggagatggcagcggtggatctgttgaaccggcacggggagctgttt
gacgcggtgcgcgtgctggacctgcttcctgaagggtggtccctgcagctgcttcgcccg
ttcctcggacgcgccctgcgggggagtatgcacgcctgccgtacctcccaggttgcactg
gggctggcgaggtcagagaacctacagctgcagcacgacaggttgaagcagaggagaagc
ccagtcctggtatcagagaagaagggctgtgttctgtgtcacaacaccttcagcgagccg
gactgtgtgtgtcttccaggaggcgtgcccgtacacacacactgtgccgcccagagagtg
gtacgggactcgcccaccaggagacaactagccaatagcaacaaccacacatga
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