Salmo trutta (river trout): 115179674
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Entry
115179674 CDS
T08542
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115179674
Transcription factors [BR:
stru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115179674
SSDB
Ortholog
Paralog
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Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115179674
NCBI-ProteinID:
XP_029597197
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All DBs
Position
39:complement(7297057..7300619)
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AA seq
339 aa
AA seq
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MYSMMMETDLHSPVPQTNTNSGHTGGSNNGNKVNQDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKD
KYSLAGGLLTGTGGGGVGLGMSPGVGQRLDSPGGHGGASAASYAHMNGWANGAYSGQVAA
AAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHPHNPQPMHRYDMSALQYSPISNSQGYMSA
SPSGYGGITYTQHQSSGVASSGSMGTLGSLVKSEPSVSPPVSTHSRAPCPGDLRDMISMY
LPTGEAAGDPSVQSRLHALPQHYQSSTTGVNGTVPLTHI
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtatagtatgatgatggagactgacctacactccccagtgccccaaacgaacacgaat
tcggggcacacgggaggatcaaacaatgggaacaaagtcaaccaagaccgcgtaaagaga
ccgatgaacgccttcatggtttggtcccggggccagcggcggaagatggctcaggagaac
cccaaaatgcacaactccgagatcagcaagcggctcggcgccgagtggaaggtgatgtcc
gaggcggagaagagacccttcatcgacgaggcgaagcggctacgagctatgcacatgaag
gagcatccggattataaatacagaccgagacggaagaccaagacactgttaaaaaaggac
aaatactctttggccggtgggctgctcaccgggacagggggtgggggtgtcggtctaggg
atgagccctggtgtcggacagaggttagacagtcccgggggtcacggtggtgcgtctgct
gccagctacgcgcacatgaacggctgggcgaacggtgcgtactcggggcaggtggctgca
gctgcggcggccgcggccatgatgcaggaggctcagctcgcctacagccagcaccccggc
agcgggcaccaccaccactcacaccaccaccacccgcacaacccccagcccatgcaccgc
tacgacatgtcggccctccagtacagccccatctcgaactctcagggctacatgagcgcc
tctccgtccggctacggcgggatcacctacacgcagcaccagagctctggtgtcgcctcg
tctgggtcgatgggcacgctgggctctctggtgaaatcggaaccgagtgtgagccctccc
gtctctactcactcgcgcgccccgtgtcccggggacttgagggacatgataagcatgtat
ttaccgacgggggaagctgcaggtgacccgtccgttcaaagtagacttcacgcgctgccg
cagcactaccagagctccacgacaggggtaaacggaactgttccactgacacatatttag
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