Salmo trutta (river trout): 115180410
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Entry
115180410 CDS
T08542
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase-like
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
115180410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stru03400
]
115180410
Enzymes [BR:
stru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
115180410
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
115180410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
115180410
NCBI-ProteinID:
XP_029598331
Ensembl:
ENSSTUG00000044403
LinkDB
All DBs
Position
40:complement(926650..931608)
Genome browser
AA seq
312 aa
AA seq
DB search
MSKRAKKNEQEDGDGDHDNGTAPAAKKGKKVKEPEAPILYSDPPDKMNSKDGHAANMKIT
SWNVDGLRAWVKKKGLDWVRDEAPDVLCLQETKCAEKSLPDEITSMPEFPHKYWAGSDEK
EGYSGVAMLCKTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNSGRGLVRLDYR
KTWDVEFKAYLSDLDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQLLA
AGFTDSFRELYPEQANAYTFWTYMMNSRSKNVGWRLDYFVLSSALLPGLCDSKIRNQAMG
SDHCPITLHMVV
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagagcgaagaaaaatgagcaggaggatggagatggtgaccatgacaacggc
acagctcccgctgccaagaaaggaaagaaggtcaaggaaccagaggcccccattctgtac
agtgaccctcctgataagatgaacagcaaagatggtcatgctgctaacatgaagatcacc
tcctggaatgtggatgggctcagagcttgggtcaagaagaagggccttgattgggtgcgt
gacgaggccccggatgtgctgtgcctgcaggagacgaagtgcgctgagaagtcccttcct
gatgaaatcacctccatgcccgagttcccccacaagtactgggctggctccgatgagaag
gagggctatagtggggtagctatgctgtgcaagactgagcccctcaaagtaacctatggc
attggtaaagaggagcatgataaggagggccgtgttatcactgctgagttccccaccttc
ttcctggtcaccgcctacgtgcccaactctggccgaggcctggtgcgcctggactatcgc
aagacctgggacgtggagttcaaggcctacctgagcgacctggacaagcgcaagcccctg
gtgctgtgtggcgatctgaacgtagcccatgaggagatcgacctgaagaactccaaaggc
aacaaaaaaaacgcaggcttcacagcagaggagcgtgagggcttcaatcagctgctggct
gcaggcttcaccgacagcttccgcgagctgtaccccgagcaggccaacgcttacaccttc
tggacctacatgatgaactctcggtctaagaacgtaggctggcgtctggactactttgtg
ctgtcctctgctctactgccaggcctttgcgatagcaagatccgcaaccaagctatgggc
agtgaccactgccccatcactctacacatggttgtgtag
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