Salmo trutta (river trout): 115180549
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Entry
115180549 CDS
T08542
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115180549
03015 mRNA surveillance pathway
115180549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115180549
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115180549
mRNA cycle factors
P-body specific factors
115180549
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
115180549
NCBI-ProteinID:
XP_029598572
LinkDB
All DBs
Position
40:21902577..21920610
Genome browser
AA seq
1328 aa
AA seq
DB search
MPAEGKRSLNMDEKEVSSFSNKEKDRDGDRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAAKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEGIKLGYERGQGNRARAHSWVLRANQLNREQEDEEASTGSHLKLIVDAFI
QQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPC
MSDVADDLCSILKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKLFSKTDTLHCLKMLL
SDFSHHHIEMACTLLETSGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAY
YYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPESKGYLICC
MVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA
KFLGELYNYRMVESAVIFRTLFSFISFGVNPDGGPSPLDPPEHLFRIRMVCTLLDTCGQY
FDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSAEHQFPIDIDYMISDTLELLRPKMRLCIS
LEDSARQVTELEREFLVKLGLAMDGQKDGRPSSAMGSEGEALDEDDDDDDEEGGADTEEQ
SGNESEMNEPEEEEGSENEEEEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHV
ACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDA
DISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQ
EQEDYQEMMASLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRKQETKQERNERHE
KRDRQERR
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagggatggtgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatattggtaaggctgcagaggagaagcggagg
cggcttgaggaggacaaaagaaagaaggaagaaaaagagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaagagaaggaggagggccaccagctccaccaggaggcctgggagcgccatcag
tgccggaaggagcttcgcgtccgcaaccagaacgcccatgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacagcctttgtcaagaagctgcgc
acgctcaccgagcagcagcgtgatgccctctccaacgactttggctcactaaacctcagc
aagtacatcggcgaggcggtgggctctgtggtggaggccaagctgaagatctctgacgtg
ggctgcgccgtgcacctgtgctccctcttccaccagcgctacgccgaattcgccccactg
ctcctccaggcctggaaaaggcactttgaggcacgcaaggaagagaaggcacccaacgta
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccatcgtaggcctgttcacg
gacaaggagggcctgtcgctcatctacgagcagctgaagagcatcatcgggacagaccgc
gagacacacacgcatgtgtcagtggtcatcagcttctgtaagcactgcggggacgacatc
gcgggcctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagcgagatcatcaacacagagaagcagcagccctttcagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacattgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagcat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggccgacttt
ctggatgagaacatgccagagcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggagagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagggcaaggacaaagaggaggctgctgctaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagctcgcc
aaaaaactgttggacgagcaaggtaaagatgaagggatcaagttagggtatgagagaggt
cagggaaacagagctagggcccactcatgggtgctcagggccaatcaactaaacagagaa
caagaggatgaggaggcaagcaccgggtcccatctgaagctcatcgtggacgccttcatc
cagcagcttcccaactgtgtcaacagagacctcatagacaaggctgccatggatttctgc
atgaacatgaacaccaagtcaaacaggaggaagctggtccgggctctctttaccgttccc
agacaaaggttggatctgctgcccttttactcccgtctggtggccacccttcacccctgc
atgtcagatgtggccgatgacctgtgctccatactcaaaggagacttcaggttccacatc
cggaagaaggaccagatcaacatcgaaacaaaaaataaaactgtaaggtttatcggggag
ctggccaagttcaagttgttctcaaaaacggacactctgcattgtctgaagatgctgctg
tcagatttctcccatcaccacatagagatggcctgcaccctgctggagaccagtggacgc
ttcctcttcagatcccccgactcccacctccggaccagcgtccttctggagcaaatgatg
cgtaagaagcaggcgcagcacctggatgctcgctacgtgaccatggtggagaacgcctac
tactactgcaaccccccgcccatggagaagactgtcaggaagaagaggcccccgctgcag
gagtacatccgcaaactgctctacaaggacctctccaaggtcaccacggagaaggtgttg
aggcagatgcgtaaactcccctggcaggacccagagtctaaaggctacctgatctgctgc
atggtcaacatctggaacgtcaagtacaacagcatccactgtgtggccaacctgctggcc
ggccttgtggcctaccaggaggacgtgggcatccacgtggtggacggggtcctggaggac
atccgcctgggaatggaggtgaaccagcccaagttcaaccagcgtcgaatcagcagtgcc
aagttcctgggggagctctacaactaccgcatggtggagtcagcggtcatcttccgcacc
ctcttctccttcatctcgttcggggtgaacccggacggcggccccagccccctggacccc
cccgagcacctgttccgcattcgcatggtctgcaccctgttggacacctgcggacagtac
tttgaccgcggctccagcaagaggaagctggactgcttcctcatctacttccagaggtat
atctggtggaagaagagtgtggaggtgtggagtgcagagcaccagttccccatcgacatt
gactacatgatcagtgacaccctggagctgctccgaccaaagatgaggctctgcatctcc
ctggaagactctgcacgacaggtcaccgagctggagagggagttcctcgttaaactggga
ctggccatggatgggcagaaggacggacggccctccagtgccatggggagtgaaggcgag
gctctagacgaggatgacgatgatgacgacgaagagggaggggcggacacagaggagcag
tctggcaatgagagcgagatgaacgagccagaggaagaagaagggtctgagaatgaggaa
gaggagcgggaggaagaagaggaggagaacactgactatctgaccgactccaacaaggag
aacgagacagacgaggagaacaatgaggtgaccatccgtggtggcggtctgaagcatgtg
gcatgtgctgaggatgaggacttcatccaggctctggacaagatgatgctggagaacctg
cagcagcggagcggggaggcggtgaaggtgcaccagttggacgtggccatccccctgcag
ctgaagagccaactgaagaaaggccctggcggacccgtctgctctggagagggggacgca
gatatctcagacaccatgcagtttgtcatgctcacacgcaagggcaacaagcagcagttt
aagatcctgaacgtgcctttatcctcccacctggctgccaaccacttcaaccagcagcag
gcagagcaggaggagaggatgaggatgaagaagctcactctggacatcaacgagagacag
gagcaagaggactaccaagaaatgatggcgtctctggcccagcggcccgctcctgccaac
accaaccgggagcggcgcccgcgctaccaacaccccaaaggggcacccaacgccgacctc
atcttcaagaccggaggaagaaagcaggaaacaaagcaggagagaaatgaaaggcacgaa
aagcgtgacagacaagagagacgctag
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