Salmo trutta (river trout): 115181491
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Entry
115181491 CDS
T08542
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115181491
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
stru01001
]
115181491
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115181491
Enzymes [BR:
stru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
115181491
Protein kinases [BR:
stru01001
]
Serine/threonine kinases: Other
PIKK family [OT]
115181491
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115181491
mRNA cycle factors
Common to processing body (P body) and stress granule
115181491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PI3_PI4_kinase
SMG1
SMG1_N
FATC
HEAT_ATR
HEAT
Motif
Other DBs
NCBI-GeneID:
115181491
NCBI-ProteinID:
XP_029599265
Ensembl:
ENSSTUG00000039251
LinkDB
All DBs
Position
Unknown
AA seq
2671 aa
AA seq
DB search
MSRKALGFRLSSAHKLQRNWNDWQPRGDSVSAASQDGVKCIATRDLGPAAAAVYDPTAVG
VATSDRPVSPPLLHNDAFPDTADTLDEGGGYEAAGGFSDDTFGWKSLGQELRINDATADL
TTFQQHGNRALASKDMRKSHDRGMSHSDESRLSNLLRRVSREEDRDRRLATVRQLREFIT
HSDNKVALVKQLDTILSTLNDILNESSKLLSELRQEAAVCLGLLCTALSYEAERIFKWMF
VKFSSSTRDEVRLLYLVAAYRALEAAGERKAFSPVMQLVMSSLQSILENLDTPELLCQSV
RCILQVARCYPHVFSTNFRDTVDILVGWHIDHTQKQSLTQQVSGWLQSLEQFWVADLTFS
TTLLGQFLEDMEAYAEDLGHVGSGEAVDEDIPPPTVSLPKLAALLRVFSTVVRCIGQRFN
PIRGPPITQAYVSDVLNRVLACVSTAKQVLFSEPVLTAGNECVCVLLVSLEPSAQLTDAV
ITYGLDQLDACRACGPEYSLAVLSLITLIVDQINTKLPAWFVEKLLAPTSQLLELRFNRD
REVMSAALGVYQSVLSLKNIPILEAAYKLVLGEMACALSSLLVPLGLSPTPGTPSPTPPP
FPGIQHPVFAPLTLTPERAEFTLIFNLSALTTIGNTKNSLIGMWALSPTVFALLSQNLML
VHSDLAVYHPAVQYAVLYTLYSHCTRHDHFISSSLSSSSPSLFDGAVISTVTTATRKHFS
TLLSLLGALLRKEQLYTECPPMSLFFLRQVPIDEDDPKLLLTNQNSKQSNDDIIVMATLR
LLRLLVKHAGELREGLELGLASTPTAPWRGIIPQLFSRLNHPEAYIRQSICSLLCRVAQD
SPHLILYPAIVGSLSLEGEAQHAGNKLPSALPTFLGSMQGEGLCEEGEGTLGSNPASQEE
DGRGEEFPALCSSQDQAMMHDCYSKIVDKLSAANPTMVLQVQMLVGELRRVTLLWDELWL
GVLQQQHMHVLRRIQQLEDEVKRVQNNNTLRKEEKVAIMCEKHSALMRPVVFALDHVRGI
TTTPAETPHETWFQQTYGDAITSALERLKSPHNPANPASSWVPFKQIMLSLQQRAQKRTS
YLLRLDHISPRLAAMATTEMALPGEVSATNALTIQSVGNTITILPTKTKPKKLHFLGSDG
RNYPYLFKGLEDLHLDERIMQFLSIVNTMFTKVNQQERPHFHARHYSVTPLGTRSGLIQW
VDGATPLFGLYKRWQQREAVLQAQKAQDSFQQQPQPLPLVPRPSELYYSKIGPALKGVGL
SLDVSRRDWPLSVMRDVLKELMASTPPNLLAKELWCSCTTSSEWWRVTQSYARSTAVMSM
VGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSLRVPEKVPFRMTHNIETALGVT
GVEGIFRLSCEQVIQMMRRGRETLLTLLEAFVYDPLVDWTAGGEVGFAGAVYGGGGQQAE
NKQSKREMERDITRSLFSSRVAEIKVNWFKNREEMLGVLPQVEGAVEEYLTLQKLLSQGD
KMTTKILEEMSFLEGAESCSDHLILTLEHRYSEHTQLASRQRTVQELIQGKQGDLDQWMS
QYQAAFSSLEATQLASLLQDISSHIDLGPPSYVPATVFLQNAGQAHLISQCEGLEAELGS
LLQQRRGALRGCLEQLHSYATVALLYPRAVLLRHRAHLWKQWLEELLCDMTVDHCQQISR
QYEVQFAPQPPLASCQFLSSVELALQHQASETNTRVLRQAERVKAEGATVHACEEQLQEI
ERCISVFLLENPEQGSLSLATIISSALCTLTRRNLVMEGAAAAAGGQLVELTSRDGAWFL
EELCSMSGNITSLVQLLGQCQLLPHDLDLPSPQETAQTVYLANAVYTCLQELNTNFRQII
FPEALRCMLKGEATLETMLSELDLLVEQCADGVSLQGLADALHTHLRSAAMGLEHEADTQ
CLHITRMLRAQYSQLMQPPGGSMDAVGQDSPKMSAGQMLLVAFDGMFAQLETAFGQLTEK
MISMEVPPAWRKVDVMREARAAQVHFFHSGPHRHVLEEIFFLKRLQTIREFFRLCGSFAQ
TLSGTCPPAAEDPPPSNGPVVGLGGVGLPGKPLFRGTAAVVVSEEQMTRPIKAFTAEFVR
QMLIGLPTQTLGLALCSTLSALGLDLTAQVDAKDFGADGKVSLDELCKQTVVQGLGAGRL
SQLLLNRGTVLASSYDTAWKKLDLLRRLESSLDAAKVSLQRTQLHITMFQWQHEDVLGPR
TQPMSVSPPPRSIILSSMKKKLYKLSQDEAAIAAVQEKLASLEGSIEQRLKWAGGANPAL
APVLQDFDLTIAERRALVARESQRTSQVTFLCSTILNFEGLRMRTPEALSMDSALFELLK
RCQQTCSYAAQFNTSVSSIELQLLHRLSPVLELPIGSPDWLACAQKQLGQELATQGAVQE
EREQQLDVATESLQLLVDSIKGILSNHNRQLADVKHLLRAMAKDEENALAEGEEVTYEGS
VRQFLLEYKAWQDNVQIVLFTVVQATGQPRGGGASQEGVELLQEIPATLKELHTQSTSVY
NGLVGFASPLVTERGGDCSSPTSTAQTSFAAAVRCSGVKTQTDSMSQNSRKLLPRNLGTP
ADTPPSAQTMTSKGLNPSPKRAVRDPKTGRAVQERNSYAVSVWKRVKAKLEGRDVDPNRR
MSVTEQVDCVIKEATNVDNLSQLYEGWTAWV
NT seq
8016 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtaaagcccttgggtttcggcttagcagcgcccacaaactgcagcgaaactgg
aatgattggcagcccagaggcgacagcgtgtcagcagctagccaggacggtgtgaagtgc
atcgccaccagagacctgggtccagctgcagcagctgtatacgacccaacagcagtggga
gtagcgacctcggaccggcctgtctccccacctctcctacataatgatgccttcccagac
actgcagacacactggacgaaggtggaggatatgaagctgcaggagggttcagtgatgat
acttttggttggaagtcgttggggcaagagttgaggatcaacgatgcgaccgccgatttg
accacttttcagcagcatggaaaccgtgctttagcttctaaggacatgaggaaatcccac
gacagagggatgtctcactccgatgagtctcgcctgtccaacctcctgcgccgtgtgtcc
cgtgaggaggacagggaccgccggctggccactgtcagacagctccgggagttcatcact
cactctgacaacaaagtggccctggtgaaacagttggataccatcctcagtaccctgaat
gatattttgaatgaaagcagtaagctgctgtcagagctgcgtcaggaagcagcggtgtgc
ctgggtctgctgtgcaccgctctgagctatgaagcagagcgcatcttcaagtggatgttt
gtcaagttcagctccagcacccgggacgaggtcaggctgctctacctggtggcagcatac
cgagccctggaggcagccggagagaggaaggccttctcacctgtcatgcagctggtgatg
agtagcctgcagtccatcctggagaacctggacacgccggagctgctgtgtcagagcgtc
cgctgcatcctgcaggtggcccgctgctacccacacgtcttcagcaccaacttcagagat
acggtggatatcttggtgggctggcacattgaccacacacagaaacagtctctgactcag
caggtctcaggctggctgcagagcctggagcagttctgggtagcagacctgaccttctct
accacgctgttgggacagtttctagaggacatggaggcctacgcagaggacctgggtcac
gtgggttctggcgaggcggtagacgaggacatccctccacccacggtgtctctgcccaaa
ctggccgccctgctgagggtgttcagcaccgtggtgcgctgcatcggacagcgtttcaac
cccattagaggaccgcccatcacacaggcatacgtctctgatgttttgaaccgggtgttg
gcgtgcgtgtcgacggccaagcaggtgttgttctctgagccggtgttgacggcggggaac
gagtgtgtgtgtgtcctgctggtgagcttggagccgtctgcacagctgaccgacgccgtc
atcacctacggcttggaccagctggatgcctgccgggcctgtggcccagagtacagcctg
gccgtcctcagcctcatcacattgattgtggaccagatcaacactaagcttccagcttgg
tttgtggagaagctgctggcaccgacatcacagctcctggagctacgcttcaacagggac
agagaggtgatgtcagcagccctgggtgtgtaccagtctgttttgagcctaaagaacatt
cccattctggaagctgcgtataaactggttctgggagagatggcctgtgccctgtccagc
cttctggtccctctgggcctctccccgacccctggtaccccctccccgacccctccaccc
tttcccggcattcagcaccctgtcttcgcccccctcaccctcaccccagagagggcagag
ttcaccctcatcttcaacctgtcagccctcaccaccatcggcaataccaagaactcactc
atagggatgtgggctctgtctccgacggtgtttgcgttgttgagtcagaacctgatgttg
gtccactctgacctggccgtctaccaccctgctgttcagtatgctgtgttatataccctg
tactcacactgtaccagacatgatcacttcatctcgtccagcctgtcctcctcctcccct
tctctctttgacggggcggtcatcagcacggtaaccacggcaaccaggaaacacttcagc
actctgctgtccctgctgggagccctgctgaggaaggagcagctctacactgagtgtccc
cccatgtctctcttcttcctccgtcaggtacccatcgatgaggatgaccccaagctgctg
ctgaccaatcagaacagcaagcagagtaacgacgatatcatcgtcatggcgacgctgcgg
ttgctacggctgctggtgaagcacgccggggagctgagggaggggcttgagcttgggctc
gcctcaacccccaccgccccctggagaggcatcatcccccagctgttctctcgtctgaac
catccagaggcttacatcagacagagtatctgtagtctgctgtgtcgcgttgcccaggac
tcgccacacctcatcctgtaccctgctatagtcggatcactgtctctggaaggagaggca
cagcacgcaggaaacaagctcccgtcagccctgcccaccttcctgggcagcatgcagggg
gaggggctatgtgaggaaggggaggggacactgggaagtaaccccgcctcccaggaagaa
gatgggcggggtgaggagtttcctgctctgtgttccagccaggaccaggccatgatgcat
gactgctacagcaagatagtggacaagctttctgcagccaaccccactatggtgttacag
gtgcagatgctagtgggagagctgcgccgtgtgactctgctgtgggatgagttgtggctg
ggcgtcctgcagcagcagcacatgcacgtcctgcgcaggatacagcagctggaggacgag
gtcaagagagtgcagaacaacaacacactacgcaaggaggagaaggtggccatcatgtgt
gagaagcactctgctctgatgcgtcccgtggtgttcgctctggaccacgtgaggggcatc
accaccacgcccgccgagaccccccacgagacctggttccagcagacctacggggacgcc
atcacctcggccctggagagactgaagagccctcacaacccagccaaccccgccagcagc
tgggtcccgttcaaacaaatcatgctgagtctacagcagagggctcagaagaggaccagc
tatctgctgcgtctggaccacatcagcccccgcctggctgccatggcgaccactgagatg
gcgttgccgggcgaggtgtcggcaacgaacgcgttgaccatccaaagtgttggcaacacc
atcaccatcctgccaaccaagaccaagcccaagaaactacacttcctgggctccgatgga
cgtaactacccttacctcttcaaaggtctggaggacctccacctagatgagcgaatcatg
cagttcctttccatagtcaacaccatgttcaccaaggtgaaccagcaggagcgcccccac
ttccacgcccgccactactccgtcaccccgctggggacacgctcagggctcatccaatgg
gtggacggcgccacgccgctgttcggcctctacaagcgctggcagcagagagaggccgtg
ctgcaggcacagaaggcccaggattcgttccagcagcagccccagcccctccctctggtc
ccacggcccagtgagctctactacagcaagataggccccgccctgaagggggtggggctc
agcctggatgtttcacggcgcgattggccgctcagcgtgatgagggatgtgcttaaggag
ctgatggcatccacgccccctaacctgctggccaaagagctgtggtgctcctgtaccacg
tctagtgagtggtggagggtcacacagtcctacgccaggtccactgctgtgatgtctatg
gtgggctacatcattggcctcggtgaccgtcaccttgacaacgtgctgattgacatgacg
acgggagaggtggtgcacatcgactacaacgtctgcttcgagaaagggaagagcctgcgt
gtgccagagaaagttccgttccgtatgacccacaacatagagacggccctgggagtcact
ggggtggagggcatcttcagactgtcctgtgaacaggtgatccagatgatgcgtcgtggg
cgggagacgctgctgaccctgctggaggcgtttgtgtacgaccctctggtggactggacg
gccgggggggaggtgggcttcgccggggccgtgtacggagggggggggcagcaggcggag
aacaagcagagcaagagggagatggagagagacatcacacgctccctcttctcctcccgc
gtcgctgagatcaaggtgaactggtttaagaatcgcgaggagatgttgggggtcctgcca
caggtggagggggcagtggaggagtacctcaccctgcagaagctgctctctcagggggac
aagatgaccaccaagatcctggaggagatgagcttcctggagggggctgagagctgctca
gaccatctcatactcaccctggaacacaggtactcggagcacacccagctagcatctcgt
cagcgtacggtccaggagttgatccaggggaagcagggtgacctggaccagtggatgtct
cagtaccaagcagccttcagcagcctggaggccacacagctagccagtctactgcaggac
atcagcagtcatatagacctgggccctcccagctatgtcccagccacagtcttcctgcag
aacgccggccaggcccacctaatcagccagtgcgagggcctggaggctgagttgggctcc
ctgctgcagcagcgccgtggggccctgcgaggctgtctggagcagctccacagctatgcc
actgtggccctgctgtacccgcgggccgttctgctgcgccacagggcccacctctggaaa
cagtggctggaagagctgctctgtgacatgactgttgaccactgccagcagatttccaga
cagtatgaggtccagtttgccccccagcctccccttgcgtcgtgccagttcctgtccagc
gttgagctggccttgcagcaccaggcgtcagagaccaacacgcgggttctgcgccaggcg
gagcgggtcaaggccgagggagccacggtccacgcgtgtgaagaacagctgcaggagatc
gagcgttgcatcagtgtgttcctcctagagaacccggagcagggctctctcagcctggcc
accatcatctcatcagccctctgcaccctcaccaggcgtaacctggtgatggaaggagcg
gcagcggcagcagggggacagctggtagagttgacgtctcgtgacggggcctggttcctg
gaggagctgtgttccatgagcggtaatatcacctcattggtccagctgctggggcagtgt
cagctcctcccacacgacctggacctgccctcgccgcaggagaccgcccagaccgtctac
ctggccaacgccgtctacacctgtctacaggagctgaacactaacttccgtcagatcatc
ttcccggaggctctacgctgcatgttgaagggcgaggccaccctggagaccatgctgtct
gagctggacctcttagtggagcagtgtgcagacggggtctccctgcaggggctggccgac
gccctgcacacacacctccgcagcgccgccatgggcctggagcacgaggcggacacacag
tgtctccacatcaccaggatgttgagggcccagtactctcagctgatgcagcctccaggg
ggcagtatggacgcagtgggacaggactctcctaagatgtccgccggtcagatgctgctg
gtggccttcgatggcatgtttgctcagctagagaccgccttcgggcagctcacagagaag
atgatctccatggaggtgccgccggcgtggcggaaggtggatgtgatgcgtgaggcgagg
gcggcccaggtccatttcttccacagcggtcctcacagacatgttctggaggagatcttc
ttcctcaagagactccaaaccatcagggagtttttcaggctctgtggatccttcgctcag
acactctctggtacgtgccccccagcggctgaggaccctcctccctccaacggcccagta
gtgggtctggggggtgtaggtctaccagggaagcccctgttccgggggactgcggcggtg
gtagtgagcgaggagcagatgacccggcccatcaaggcgttcacagcagagtttgtccgt
cagatgctgattggtcttcccacccagaccctgggcctggctctctgcagcaccctgtct
gccctgggcctggacctgacagcacaggtggacgccaaggactttggagccgacggcaag
gtgtcgttagatgagttgtgtaagcagacggtggtacagggtctgggcgcaggccgtctg
tctcagctgctactgaacagaggtacggtgctggcatcctcctacgacacggcctggaag
aaactggacctgctcagacgcttggagtccagcctggacgctgccaaggtctccctgcaa
cgcacccagctacacatcaccatgttccagtggcagcatgaggacgtgctcggccctagg
acccagcctatgagtgtgagccctcctcctcgctccatcatcctcagtagtatgaagaag
aagctttacaaactcagccaggacgaggcggccatcgctgctgtacaggagaagctggca
tcactagagggcagtatagagcagcggctgaagtgggccggaggggccaaccctgccctg
gccccggtgctccaggactttgatctgaccatcgcagagcgccgcgccctagtggcccgg
gagagccagcgtaccagccaggtgacgttcctgtgcagtaccatactgaactttgagggt
ctgcggatgcggacccctgaggccctgagcatggactctgctctgtttgagctgctgaag
aggtgccagcagacctgctcctacgctgcccagttcaacacctccgtctcctccatagag
ctacagctgctccacagactgagcccggtgttggagctgcccatcggcagccctgattgg
ctagcttgtgcccagaagcagctgggtcaggagctggctacccagggggctgtgcaagag
gagcgcgagcagcagctggacgtcgccacggaatcactgcagctattggtggacagcatc
aagggcatcctgtccaatcacaaccgccagctggctgacgtcaaacaccttctgagggcc
atggccaaggacgaggagaacgcgctggcggagggggaggaagtgacctacgagggcagc
gtccgccagttcctgttggagtacaaggcgtggcaggacaacgtgcagatcgtgctgttc
actgtcgtccaggcaacgggccagccccgagggggaggggccagtcaggagggggtggag
ctactgcaggagatacctgctaccctgaaggagctacacacacagagcaccagtgtgtat
aacggcctggttggctttgcgtctccgttggtgacagagaggggtggagactgttccagc
cccacctctacggctcagaccagcttcgctgcagcggtgaggtgcagcggtgtgaagact
cagacggactcaatgtcccagaattcacgcaagctcctcccccgtaaccttggcaccccg
gcggacaccccacccagcgctcagacgatgaccagcaagggtctgaatcccagccccaaa
cgggctgtacgcgaccccaagacgggacgagctgtccaggagaggaactcgtacgcggtg
agcgtgtggaagagggtgaaagccaagctggaggggagagacgtagaccccaacaggagg
atgagtgtcactgagcaggtggactgtgtgataaaggaggccaccaatgtggacaacctg
tcccagctgtacgagggctggacagcctgggtgtga
DBGET
integrated database retrieval system
