Salmo trutta (river trout): 115181690
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Entry
115181690 CDS
T08542
Name
(RefSeq) LIM domain-containing protein 1-like
KO
K16682
LIM domain-containing protein
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115181690
03036 Chromosome and associated proteins [BR:
stru03036
]
115181690
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115181690
Chromosome and associated proteins [BR:
stru03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
115181690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
115181690
NCBI-ProteinID:
XP_029599386
Ensembl:
ENSSTUG00000027910
LinkDB
All DBs
Position
3:59559009..59591252
Genome browser
AA seq
664 aa
AA seq
DB search
MDKYDDLDLEASKFLEDLNMYEASRDGLFRMKRDAGNNSDFEETRRVFASKMTKIHIQKQ
QEEIAKNNLAVRMNGGHNRAADSTFYTKDRPPINSYRQAGEAAAKPPILSGPMPGTASAA
SQYAPYDVLKHHSPSQQPYSYGNNYDNKERFEPHSYHHALSPTSPGNARTHASVHPASPS
GTWASYSSSPGGSSGLMCSPSQQPPHHSPSPSFSDSLPSPSPTRLHQSKAATLLVRQRPP
MVADAGAAADWMRSLGNPDLLAPLPLSAFTGGVDLYQHLSPQPAPVTPPTGPYSAAPSMA
PRPTANQGNLGQNGLSQSPVALTPSPTPAQVAVPAPPAPPSETAQPKATTGAYFPASASP
SGTSVSRSFGQGQGVGQAQGRQVAMGVDVPSGLDSQLSSGGEACQLQPQPQSLKLPCQTL
HVQPEQGPSAAEIKLEALTKRLEKEMDAQPKADFFGSCVKCNKAVYGATEACQAMGSLYH
DVCFTCSACSRRLRGKAFYYVGGKVFCEEDFLYSGFQQSADKCNACGHLIMDMILQALGK
SYHPGCFRCVICNDSLDGVPFTVDTENKIYCVKDYHRVLAPKCAACNQPILPSEGSDETI
RVVSMDKDYHVECYHCEDCQMELNDEEVHRCYPLNGHLLCHACHLKHIEPGCASPTAASY
QHQF
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttggatcttgaggcaagtaaatttttagaagacctcaatatg
tatgaggcatctagggacgggttgttccgaatgaagagggatgcagggaacaactccgac
tttgaagaaactaggagggtttttgcctccaaaatgacaaaaatccacatacagaaacag
caagaggaaattgccaaaaacaatttggcagtgagaatgaacgggggtcacaacagagcg
gcagacagcacgttttacaccaaagacaggccgcctatcaatagctacagacaggcagga
gaagctgctgccaagcctcccatactctctggccctatgccaggcaccgccagtgccgcg
agtcagtacgcgccctatgacgttctgaaacaccattcacccagtcaacagccatacagc
tacggaaacaattatgataacaaggagcgttttgagccgcattcttaccaccacgccttg
agtcccaccagcccagggaacgcacgcacacatgcttctgttcaccctgccagtccctct
ggcacttgggcctcttactcttccagccctggtggatcatcagggcttatgtgcagccca
tctcagcagcccccacaccactcaccatctccctccttctccgacagcctaccatctcca
agccccactagactgcaccagagcaaggctgccactctactagtgcggcagagacccccc
atggtggctgatgctggggctgcagcagactggatgcggagcttggggaacccagacctg
ttagcaccgctccctctgagtgccttcactggcggtgttgacctgtaccagcatctgtct
ccccaacctgcccctgttacaccgccaacaggcccttactcagcagcaccctccatggcc
ccaagaccaaccgccaaccagggaaatctaggccagaatgggctctctcagagtcctgtg
gctctcacccccagccccacccctgctcaagtggctgtcccagccccacctgcaccccca
tctgagacagcccagcccaaagccaccactggagcttacttccctgcctctgcctctccc
tctggaaccagtgtctctagaagctttggccagggtcaaggtgtaggccaggcccagggc
aggcaagtggccatgggggtggatgtgccctctggcctagacagccagctgtcctctggt
ggtgaggcttgccagctccaaccccagccccagtctctcaaactgccctgccagactctc
catgtccagccggagcaggggccgtctgccgccgagatcaaattagaagccctgaccaag
cgtctggagaaggagatggacgcccagccaaaggcagacttcttcgggagctgtgtgaag
tgtaacaaggcggtgtacggagccactgaggcctgccaggctatgggaagcctctatcat
gatgtctgcttcacctgcagcgcctgcagcagaaggcttcggggaaaagcattttactac
gtcggtgggaaggtgttctgtgaagaggactttctgtattctggattccagcagtctgca
gacaagtgtaacgcatgtggacatctgatcatggatatgatcctgcaggcccttgggaag
tcctaccaccctggctgtttccgttgtgtcatctgtaacgacagtctggacggagtgccc
ttcactgtggacacagagaacaagatttactgtgtcaaagactaccacagggtcttggcc
cccaaatgtgcagcatgtaaccagcccattctgccttcagagggctctgatgaaaccatc
cgagtggtatccatggataaagactaccacgtagagtgctatcactgtgaagactgtcag
atggagctgaacgacgaggaggtgcaccgctgctacccgctgaacggccacctcctctgc
cacgcctgccacctgaagcacatcgagccgggctgcgcctcgcccaccgctgcctcctac
cagcaccagttctag
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