Salmo trutta (river trout): 115182477
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Entry
115182477 CDS
T08542
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stru00535
]
115182477
Proteoglycans [BR:
stru00535
]
Extracellular matrix (ECM) proteoglycans
Others
115182477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
FN3_Tor_3rd
VWA_3
Motif
Other DBs
NCBI-GeneID:
115182477
NCBI-ProteinID:
XP_029599936
Ensembl:
ENSSTUG00000020764
LinkDB
All DBs
Position
Unknown
AA seq
1690 aa
AA seq
DB search
MRVFMYFSTLCASAEDLEGEGGEGESTLPLRLDDTGGTEEINEISGADPFVCTTQAIADI
VILVDGSWSIGRLNFRLVRMFLENLVNAFSVGIDQTRIGLAQYSGDPRIEWHLNAFTTKD
AVLDAVKNLPYKGGNTLTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPA
QSLRDAGIELFAIGVKNADENELRAIASEPDNTHVYNVADFSIMSSIVEGLTQIVCERVE
EQDKEIKGESAGQETQGAPQDLVTSEVTARSFRVSWSHAPGGVEKYRVVYYPATQGGRPE
EAVVDGTENSVVLRYLNSLTEYQLAVFAVYTSTASEALRGSETTLALPMVNGLELYDVTH
NTMRARWSGVQGVSGYMVLYAPLTKDGASDEKEMKVSDAVTDLELEDLTPATEYTVTVYA
MYGEEASDPMTSQQTTLPLSPPKNLVFSEVDHNSAKLSWEAASRKVTGYRIMYVKTDGLK
TDEVDVGPVTSWTLNDLTSAREYEVAIFGIYDEGQSEALSGSFTTDPVPGPLDLQASEVT
ADSFRVSWGHSAPGIVLYKLTWAPYDGGDTKELVLSGDVDSFLLSGLSPNTEYEVMLQAI
FTDQSESDAVLVVETTLARTTTVATTTPVVRQAVRGLQVQEETTYSLEVSWQLEDPKVDQ
YRVTYVSLTGDRNEESVLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGISVSSVGRT
LPLSAPSNLRVSEEWFSRFRITWDTPPSPTLGFRVVYQPTSAEPVSVFPTVPGSALETFV
GDDVNTMLILNLQSDTEYTVKVISSYTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSMCV
QWQPHRQADLYRVVIESLLNGQKQEVSVGGSASRQCFYDLTPNSQYKISVSTQLQDMEGP
AVTTFTTTLPVPTQPPTPPPTSPPLPTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKI
IRFLYSTMGALDLIGPDGTQVAIAQFSDDARTEFKLNSYANKETLLDAIRRITYKGGNTK
TGRAIKHVKESIFTSEGGVRRGVPKVLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFAD
ADYGELVNIASKPSDRHVFFVDDLDAVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFR
MMDMFGLVEKEYSNVEGVSLEPGSFNSFPCYRLHKDALVSQPTKYLHPEGLPSDYTITFL
FRLLPDTPQEPFALWEILNKDNEPLVGVILDNGGKTLTFFNYDYKGDFQTVTFDGPDIKK
MFYGSFHKLHMAISKTTARVVVDCKVVGGKPINAAGNISIDGVEVLGRMVRSRGKRDNSA
PFQIQMFDIICSTSWASRDKCCELPGLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAG
IRGARGDRGEPGNVGPQGLVGDKGPPGPQGPPGPQGPSGHSIQGPPGGDGEKGEKGDIGL
PGPQGISGSPGGPGRDGPVGQRGLPGKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGD
QGPPGSAGTKGDKGERGDLQSQATVRALARQVCEQLIQSHLSRYSSILNQIPSQSVSVRT
VPGPPGEPGRRGLPGPQGEGGPTGRPGFPGTNGQDGRPGERGLPGEKGERGSQGVGTQGP
RGPPGPPGLLGEGRTGSQGPAGRPGSQGTPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGE
GQEQEYENDY
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgagggttttcatgtatttctctactctctgtgcctcagctgaagacctggagggtgag
ggaggagagggtgagagcacattgcctctgagacttgatgacaccggagggactgaggag
atcaacgagatatctggagcagatccttttgtctgtacgactcaggccatagctgacata
gtgatcctggtggatggatcctggagcatcggcaggctcaacttccgcttggtccgcatg
ttcctggagaacctggtcaacgctttcagcgtcgggatcgaccagaccaggataggtctg
gcccagtacagtggggaccccaggatagagtggcatctgaatgccttcaccactaaagat
gcagtcctggatgctgtgaagaacctgccctataagggaggcaacacactgacaggcctg
gccctgacctatatcctggagaacagcttcaagccggagtcaggctccaggagcggcgta
cccaaagtcggtatcctaatcacagatgggaagtcccaggatgacgtgatcccccctgcc
cagagcctgagggacgctggcatcgaactcttcgccatcggtgtaaagaatgctgatgag
aatgagctgagggccatagcttctgagcctgacaacactcatgtgtacaacgtggcagac
ttcagcatcatgagctctatcgtagagggactgacccagatagtctgtgaacgggtagag
gagcaggacaaggagatcaaaggagagtctgcaggacaggagacacagggagcccctcag
gacctagtgacatcagaggtgacagccaggagtttcagggtgtcctggagtcacgctccc
ggcggtgtagagaagtaccgtgtggtgtactaccctgctacccagggaggacggcctgaa
gaggctgtggtggacggcacagagaactctgtggttctgcggtatctcaactccttaaca
gagtaccagttagctgtgtttgctgtctacaccagcacagctagcgaggcacttcgtggc
agcgagaccacattggctctccccatggtgaacggcctggagctgtacgacgttacccac
aacaccatgcgggcgcggtggagcggtgtgcagggcgtctcggggtacatggtcctatac
gcccccctgaccaaggacggggcctccgacgagaaagagatgaaggtgtcagatgcagta
actgatctggagctggaggacttgactcctgctacagagtacactgtgacagtctatgcc
atgtatggagaagaagctagcgatcctatgactagccagcagaccaccttaccactgagc
cctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaactgtcatgggaa
gctgcctctaggaaggtgacaggataccgcatcatgtacgtcaagactgacgggctaaag
actgatgaggtggatgtgggtccagtcacgtcctggactctgaatgacctgacgtctgca
agggagtatgaggtagccatctttgggatctacgacgagggccaatcagaagccctctct
ggcagcttcaccaccgaccctgtgccaggccctcttgacctccaggccagtgaggtcacc
gcagacagcttccgggtcagctggggtcactctgctccaggaatcgtcctctacaaactg
acctgggctccttatgatggaggggacactaaggagttggttctaagtggtgatgtggac
tccttcctcctcagtggactgagccctaacacggagtatgaagtgatgctccaagccatc
ttcaccgaccaatcagagagcgatgcagtgttagtggtggagacaacacttgccaggaca
acaacggttgccactacaacgccagtggtacgtcaggcggtgagaggcctgcaggtccag
gaggagaccacctacagcctggaggtgtcatggcagctggaggatcctaaggtggaccag
tacagagtcacctacgtcagcctcacaggagaccgcaatgaggagtcagttctggtgcct
gggcagcagaccacagttcttctccagcctctgctgtctgacacagagcacaaggtgacg
gtcaccccagtctacacagatgggcaggacggcatcagtgtgtcttctgtgggcagaaca
ttgcccctctcagcgcctagcaacctgagggtgtctgaggagtggttcagccgcttccgc
atcacctgggacacgcctccttctcccaccttgggcttcagggtagtctaccaacccaca
tctgctgagccagtctctgtgtttcctacagtgccggggtcagctctggagacttttgtg
ggagacgacgtcaacaccatgctgatcctgaacctgcagagtgacactgagtacactgtg
aaggtcatctcttcctacaccacgggatccagccaaccactccagggcaccgccaagaca
ttgtatctgggcgtgaccaacctgaacacctaccaggtgatgatgtccagtatgtgtgtc
cagtggcagccccatcgtcaggctgacctctacagggtggtcatcgagtctctgctcaat
ggccagaaacaggaagtgagtgttggaggctctgcttctagacagtgtttctatgatctg
acccctaacagccagtataagatcagcgtttccacccagctacaggacatggaggggccc
gccgtcaccaccttcactactacactccccgtccccacccagccaccgacaccaccaccc
acgtcaccccccctaccgaccataccgcccgccaaggaagtctgtaaagcagccaaagct
gacctggtcttcttggtggacggctcttggagcatcggagacgacaacttccagaagatt
atccgcttcctgtacagtacgatgggagctctggatctgattggtcctgacggcacacag
gttgctatagcacagttcagtgatgatgccaggactgagttcaagctgaactcatacgct
aacaaggaaacgctgctcgacgccatcaggcgaatcacatacaagggagggaacaccaag
acaggccgagccattaagcatgtgaaggaatctatcttcacctcagagggaggagtgagg
aggggggttcctaaggttctggtggtcctcaccgatggccgttcccaagacgacgtcaac
aaggtctccaaggagatgcagatggaaggctacatcatctttgccattggctttgctgac
gcagactacggagagttggtgaacatcgccagcaaacccagcgacagacacgtcttcttt
gtggacgatttggacgctgtcaaaaaaattgaggagcagctgatcacttttgtgtgtgag
gctgccactgccacttgtccatcggttctgatgagtggcaacactatggcaggcttcagg
atgatggacatgtttggcctggtagagaaggagtacagtaacgtagagggagtgtccctg
gaaccaggctccttcaacagcttcccctgctacagactgcacaaagacgccctggtctca
caacccaccaagtacctccacccagaaggtctgccctctgactacaccatcaccttcctg
ttccgcctgctaccagacaccccccaggagccctttgcattgtgggagatcctcaacaaa
gacaatgaacccctggtgggggtcatcctggacaatggtgggaagactctgacgttcttc
aactacgactacaagggagacttccagacagtcacttttgacgggcctgacatcaagaag
atgttctatggcagtttccacaagctccacatggcgatcagtaagaccacagccagggtg
gtggttgactgtaaggtagtgggaggaaagcccatcaacgcggctggcaacatcagtata
gacggggtggaggtactgggacgcatggtacgatccagagggaagagggacaactcagct
ccgttccagatccagatgtttgacattatctgcagcacgtcctgggccagtcgagacaag
tgctgtgagctccctggactgaggctggaggaggactgtcctgccatgccccatgcctgt
agctgttctcaggacagtaaaggacctcccggacccacaggacctcccggaggtgctggt
atcagaggggccaggggagatcgaggggagccaggcaatgtggggcctcaaggactagtt
ggtgataaaggtcctcctggaccacagggcccccctggtcctcaagggcctagtggacat
tccatccagggaccaccgggtggtgatggtgaaaagggagaaaaaggagatattggttta
ccaggacctcagggtattagtggatctcctggcggaccaggaagagatggaccagttgga
cagaggggcctgcctgggaaggatggaccacaaggacagcagggtactacagggcccgtt
ggcagtcctggggcccccggggcccctggtggaagtggctctcctggacccctgggagac
cagggaccacctggctctgctggtaccaaaggagacaagggtgaacggggagacctgcag
tctcaagctaccgtcagggccttagcacgccaagtgtgtgagcaactgattcagagtcac
ctgtctcgctacagctccatcctgaaccagatccccagccagtcagtgtctgtgaggacg
gtaccaggacctccaggagagcccggtcgcaggggtctgccagggccacagggagaaggg
gggcccacaggcagaccagggttccctgggaccaacggacaggatggacgaccgggggag
agaggtctcccaggagagaagggggagagggggagtcaaggtgtggggacacagggcccc
agaggtccaccagggccaccaggtcttctaggagagggccgtacaggcagccaaggtcct
gccggtagaccaggcagccagggcaccccagggcgaccgggcacccctggatccacgggc
cctgctggtgctgctggctactgcgaccagaactcctgtttgggctacaacgttggagaa
ggacaggaacaggaatatgagaatgactactga
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integrated database retrieval system
