Salmo trutta (river trout): 115183049
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Entry
115183049 CDS
T08542
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115183049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115183049
03041 Spliceosome [BR:
stru03041
]
115183049
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115183049
Spliceosome [BR:
stru03041
]
Complex B
Other components
Prp19-related factors
115183049
Complex C
115183049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21
ARM_TT21_C
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
115183049
NCBI-ProteinID:
XP_029600259
Ensembl:
ENSSTUG00000021379
UniProt:
A0A674A224
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MPSLNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGTMSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCIMEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGKDEEEDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATISDLAPGQLGLDDMKLLEQQAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDGDDEDQGPEEVQLEQKTVPTA
VFGGLKEGED
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctctaaatgggaaaccggacgtcatgtttgaggaagatgacttgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagttcaaa
caaaacggcacaatgtccatcctcaacatgatatatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgcgagagagacggaaacaggtcaaagggaag
tgcatcatggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatatggctagactactgccagttcctggtgtctcagtgtaag
atcaccaggagcagacgcacatttgaccgagcgctcagagcccttcctgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcggcaagctggatgaagcagcagtacgtctggcagccgttgtcaat
gatgagagctttgtgtccaaggagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgcttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgggatgtgtatgaggaggccatcttaacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgattgctgccaagatggagactacctccgagttggggaaagatgaagaagaggacgta
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctgagacagaatccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttttac
gaggagaacgagcagctagacgacgcacggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgacgtgtcagagcccgtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggca
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactatgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcacgccatggcggtgtacgagagagccacacaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctatggcgtc
acctacaccagagcaatctaccagaaagccatcgaggtacttccagacgaacactccagg
gacatgtgcctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggcaga
gccatctactcctactgctctcagatctgtgacccaaggatgacggcgacgttctggcag
acgtggaaggagtttgagatccgccacgggaacgaagacactatccgggagatgctgagg
atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccatctcagaccttgccccgggccagctggggctggat
gatatgaagctgttggagcagcaggcccaacagctggccgccgaagctgaacaggacaaa
cccaaactcaaagagaagatcctcttcgtcaggagtgacacatctcgcagtgagctggct
gaactggccaaacaagccaaccctgatgagattgatattgatgatgaggatgaggatggt
gatgatgaagaccagggcccagaggaggtgcagctggaacaaaagactgtccccactgct
gtctttggagggctgaaagaaggagaagattga
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integrated database retrieval system
