Salmo trutta (river trout): 115185216
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Entry
115185216 CDS
T08542
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03030
DNA replication
stru03410
Base excision repair
stru03420
Nucleotide excision repair
stru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115185216
03410 Base excision repair
115185216
03420 Nucleotide excision repair
115185216
03430 Mismatch repair
115185216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stru03032
]
115185216
03400 DNA repair and recombination proteins [BR:
stru03400
]
115185216
DNA replication proteins [BR:
stru03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
115185216
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
115185216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_7
AAA_22
AAA_5
RuvB_N
Rad17
AAA_33
AAA_14
AAA_30
AAA_16
AAA_17
nSTAND3
BRCT_2
NPHP3_N
RNA_helicase
AAA_18
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
115185216
NCBI-ProteinID:
XP_029601590
Ensembl:
ENSSTUG00000020420
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MDIRRFFVSSKPAAQKPSQDGTLNTEKESTKKKSVSTDEEVKKKRTVAKITSPKVEKKKK
DSDKKRKKRAVIESDSEEEVVKQKAQKQDPPLPPAPLPPAKKDPVQYVSETDSDSDNFLS
LKKSAKPQGNGVTKPKKARTGTKESHRSPSKPTPAPAKGKGGIKKSPSAPVTPKSAPQQT
KRTPTSVLDYFGGGSVQRSDKKLVASTKRKADHDESLTDEVIAQQLQMDEDMELERLVHE
DEEFARTLAMLDQEPHAKKARKDSGVDLGSETSANKSIANSSHSSTTSQSQSNGRDHNQD
VIGPSPKKVPPLVKTSSKLALMKRREVEEEGGGKTNLTITTPLSPKKERVSPKKEFLTPS
STDRKSKPKTGSVTMVTTRTTLKTSPKKESSSPEDSEKKRGNSSAFRSFLNRDGPRALGS
KPIPTGAENCLEGCVFVISGVLESMEREDARSLIERYGGKVTSNVSKRTTYLVMGRDGGA
AKTDKAEGFGTKILDEDGLLELIRSSPGKKSKYLIAAEAENKGFKSRTPDTKALSRTPKQ
SPKTRSKTPSPSKPGSASGRGVRVGDSVTPPARGTGSGVKRGLDLGGKSQSSSSSATLSL
PSLAGEDFSLLWVDKYRPQNLKAVIGQQGDQSQANKLLRWLKNWHTHHAVGGAKPAGRGF
GKFSSTKDNGSSFKAALLSGPPGVGKTTTAALVCQELGYSYVEMNASCTRSKNSLKQVIA
ESLNNTSINNYYTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKQSRIPIICMC
NDRNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKVPPPALNEMILASNQDIR
QVLHNLSMWSAKDKVMTYDRVKEDANNARKDMKLGPFDVCRKVFSKGEESSHMTLIDKSD
LFFHDYALAPLFIQENYIHVRPAAAGGDLKSHLVLLSKTADSICDGDLVDRQIRSKQTWS
LLPTQAIYSSVLPGELMRGYMNSFPSFPSWLGKFSSCNKHSRIIQELASHMSLKTLSSRQ
AVSLDYLPYLRMSLLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSLMEISLWGGQPDPYA
QLDPKVKSAFTRAYNRETHLTPYSLQPIKKGRRGGGVEAELGGEEQAGQPEEEEEEE
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggacatcagacggttctttgtatcaagcaaacccgcagcgcagaaaccgtctcaggat
ggaaccctcaacacagagaaggagtccacgaagaagaaatccgtctcaacagacgaagaa
gtgaagaaaaagagaactgtcgctaagatcaccagccccaaggtggagaagaagaagaag
gacagtgataaaaagagaaagaagcgtgctgtcattgagtcagactctgaggaggaggta
gtgaagcagaaggcccagaaacaggaccctcctcttcctccagctcctcttcctcctgcc
aagaaagacccggtgcagtacgtctctgagacagattcagacagtgataacttcctgtct
ctgaagaagtctgcaaagccccagggtaatggagtgaccaaaccaaagaaggcccgcacc
gggaccaaagagagccacaggtccccctcgaaacccacccctgcgcccgccaaggggaaa
ggagggataaagaagtctccttcagcccccgtcacccctaaatcagcgccccagcagacc
aaacgcacccccacctctgtcctggactactttggcggtgggagtgtccagcgctccgac
aagaaactggtagcaagtaccaagaggaaagctgaccatgatgagtcgctgactgatgag
gtcatcgcccagcagctgcagatggacgaggacatggagttggagaggctggtccacgag
gacgaggagtttgccaggacgctggccatgttggaccaagaaccacacgccaaaaaggct
cgtaaggactctggtgtggatctggggtctgagacgtcagccaacaaaagcatcgctaac
tcctcccacagtagcactaccagccaatcacagtccaatgggcgggaccacaaccaggac
gtgatcggtccgtcccctaaaaaggtcccccctcttgttaaaaccagttccaaactggcc
ttgatgaagagaagggaggtggaagaggaaggaggagggaagacaaatctgactatcaca
acacccctctcccccaaaaaggagcgcgtctcccccaaaaaggagttcctaaccccttca
agcacagacaggaagtccaagcccaaaacaggaagtgtaaccatggtgaccacacgcacg
actcttaaaacctcccccaagaaagagagctccagtccagaggattcagagaagaagcga
gggaactcctcagccttccgtagtttcctgaacagagacggacccagagccctgggatct
aaacccatacccactggagcagagaactgcctggaggggtgtgtgtttgtgatatctggt
gtgttggagagtatggaacgtgaggatgccaggtccctgatcgagcgttacggagggaag
gtgaccagcaacgtcagcaagaggaccacatacctggtgatgggcagagacggaggagca
gccaagaccgacaaggcggaggggtttggaactaagatcctggatgaggatggtctgtta
gagctcatcagaagttcaccagggaagaaatccaagtacctgattgctgccgaggccgag
aacaagggatttaagagcagaaccccagacaccaaggccttgtcccgcactcccaaacag
tccccaaaaactcgctccaagacgcccagcccctccaaacctggctcagcgtcggggcga
ggagtcagggtgggggacagcgtgacccccccagcgagaggtacaggttcaggggtcaaa
agagggctggacttggggggtaagagccaatcatcttcctcctctgccactctgtctttg
ccctcattggcgggtgaagatttcagtctgctgtgggtggataagtaccgcccccagaat
ctgaaggctgtgattggtcagcagggagaccagagccaagccaataagttgcttcgctgg
ctgaagaactggcacacccaccatgcagtgggaggggctaaaccagcaggcagagggttt
ggtaagttcagcagtactaaggataacggctccagcttcaaggcagcgctgctgtctggt
cctccaggggtgggcaagaccaccacagctgctctggtctgtcaggagctgggttatagt
tatgtagagatgaatgccagctgtacccgcagtaagaacagtctgaaacaggtgatcgct
gagtctctgaacaacaccagtatcaacaactactacacaggttcgtctcagacagtcagc
agtaagcatgttctcatcatggatgagattgatggcatggcaggaaacgaagatcgggga
ggaatacaggagatgataggtctgattaaacagtccaggatccccatcatctgtatgtgt
aacgatcgtaaccaccagaagatccggtctctggccaactactgctttgacctgcgcttc
cagagaccacgactggaacagatcaagggtgccatgatgtccattgctttcaaagagggt
ctgaaagtcccgcctcctgccctcaacgagatgatcctggcgtccaatcaggacatccga
caggtcctccacaacctgagcatgtggtcggctaaggacaaggtcatgacctacgaccgg
gtcaaagaggacgccaacaacgcacgcaaggacatgaagctgggtccgtttgacgtgtgt
cggaaggtgttctccaagggggaggagtcgagtcacatgacgctgattgacaagtcggac
ctgttcttccatgactacgccctcgcccccctcttcatccaggagaactacatacatgtt
agacctgctgctgctggtggtgatctgaagtcccacctggtcctcctcagtaagacagct
gattctatctgtgatggagacctggtggacagacagatacggtccaaacagacctggtct
ctactgcccacgcaggcgatctattccagtgtgttaccaggagagttgatgcgtggttat
atgaactccttcccctcgtttccctcctggctgggaaagttctcctcctgcaataaacac
tctcggatcattcaggagctggcctctcacatgagcctcaagacattaagtagcagacag
gcagtgagcctggactacctcccgtacctccgcatgtccctgctgtgtcctcttcagagg
cagggggcggagggggctggtcaggccgtccagctgttagacgactaccacctggtcaga
gaggatgtggacagcctcatggagatcagcctctgggggggccagcctgacccctacgct
caactagaccccaaggtgaagtcagcgttcacgagggcctataaccgggagacccacctg
acaccctactccctccaaccaatcaagaagggccgtcgtggcgggggagtggaggcagaa
ctgggaggagaggagcaagcgggacagcctgaggaagaggaggaggaagag
DBGET
integrated database retrieval system
