Salmo trutta (river trout): 115186134
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Entry
115186134 CDS
T08542
Name
(RefSeq) retinoic acid receptor RXR-beta-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru03320
PPAR signaling pathway
stru04148
Efferocytosis
stru04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115186134
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
115186134
03320 PPAR signaling pathway
115186134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115186134
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
stru03310
]
115186134
Transcription factors [BR:
stru03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
115186134
Nuclear receptors [BR:
stru03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
115186134
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
115186134
NCBI-ProteinID:
XP_029601737
Ensembl:
ENSSTUG00000011327
LinkDB
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Position
3:69170483..69187432
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AA seq
431 aa
AA seq
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MSSHQPTSSASNSPTSTFGSPFSVISPSLGSPGVAPSMGYGPISSSQINSTMGMHSISSS
DDVKPPFGLRPMSAHSPGIMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLS
YTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQKSVQEERQRIREREEGLE
CSSAVNEEMPVEKILEAETSVEQRAELHSDAGSAGSSPHDAVTNICQTADKQLFALVEWA
KRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGVLLANELHRDNAHSAGVAAI
FDRESVQSAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNTGEVEL
LREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MEMLEAPHQLA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcatcagcccaccagttcagcctccaacagtcccaccagcacctttggctcg
cctttctcagtcatcagcccctcactgggatcccctggtgtggcaccctccatgggttat
gggcctattagcagtagccagatcaactctacaatggggatgcactcaatcagcagctcg
gatgatgttaaacccccgtttggcttgaggcctatgtctgcacacagccctgggataatg
ctctcccagaaacgcatgtgtgccatctgtggagaccgctcctctggtaagcactatggt
gtgtacagctgtgaaggttgcaagggcttcttcaaacgcacagtgcgcaaggacctgagc
tacacctgcagggataacaaagaatgcctggtggacaagcgccagcgcaatcgctgccag
tactgtcgctaccagaagtgtctggctatgggcatgaagagggaagtggtccaagatgaa
cgtcagaaatcagtccaggaggagcgtcagaggatcagggagcgagaggagggactggag
tgcagcagtgctgtgaacgaggagatgcccgtggagaagatcttggaggcagagacgtcc
gtggagcagagggcagagctccactcagatgcaggctccgctggtagctctccccatgat
gcggtgacaaacatctgccagactgcagacaagcagctgtttgcgttggtggagtgggcc
aagaggatcccccatttctctgagctgcccctggacgaccaggtcatcctcctgcgtgca
gggtggaatgaacttctgatcgcctccttctcccaccgctccatcgctgtgaaggacggg
gtcctgctggccaatgagctacaccgggacaatgcacatagtgcaggggtggcggccatc
tttgacagggagagtgtgcagagtgctgaggtgggagccatatttgaccgggttctcact
gagctggtcagtaagatgagagacatgcagatggacaagacagagctgggctgcctccgt
gccatcgtcctcttcaacccagacgctaaaggtctgtccaacaccggagaggtggagctc
ctgagagagaaggtctatgcgtcactggaagcctactgcaagcagaaatacccagagcag
cagggaaggtttgctaagctcctcctcaggctgccagcactgcgttctattggcttgaag
tgtttggagcacctgttcttcttcaagctgatcggtgacacccctatcgacacgttcctc
atggaaatgcttgaagcacctcatcagttggcatag
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