Salmo trutta (river trout): 115186229
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Entry
115186229 CDS
T08542
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
stru
Salmo trutta (river trout)
Pathway
stru04010
MAPK signaling pathway
stru04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115186229
04020 Calcium signaling pathway
115186229
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
stru04040
]
115186229
Ion channels [BR:
stru04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115186229
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FAM176
UPF0542
Trm112p
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
115186229
NCBI-ProteinID:
XP_029601764
LinkDB
All DBs
Position
Unknown
AA seq
1290 aa
AA seq
DB search
MGQHSRPRLLYQLAGVVPSPLLLELLSCPLCTRALEDMELDLSDLEGSRGEAHALHDFPQ
GGEGLGGRGRRRRKAGLGVGLGLGVKRVSNRLVELGNGFRDRLKRIVDSKYFNRGIMISI
LINTLSMGIEYHQQPVELTDILEISNIVFTCMFLLEMAFKLLAFGLFGYIKNPYNIFDGI
IVIISVWEIIGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCTLLM
LFIFTFSILGMHLFGCKFNLQMENGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNG
MASTSPLAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRADSDDDKRSDDDGEEEE
KKEAGELKDTELKMYSLMMTANGHAERDPLAPPIMITRTGATPRSSLGPESVPGDGLVDG
DVCSGMDCGGSRRRGSAAASVDTSAYDQRSLSSPGQHSPLPPRGQGSVSGWGSRRSSWNS
LNRAPSLNRAPSLKRSKTSGERESLLSGEGGGGEEEEEGSLELLQVSSLGPSVTGEYGDC
NGRSLHHMTYDPNKDNLSPDDDMEEDNLWFRVRRTLLSHQPGWCREHKDWNLYLFSPQNS
FRVWAKGMISHKMFDHVVLIFIFLNCITIALERPGIQPHSTERVFLTVSNYVFTVIFLAE
MTVKIVALGFCWGKQSYLKSSWNVLDGILVFVSLVDILVSLALTGGNRILGILRVLRLLR
TLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFTVFGILGVQLFKGKFYLCEGL
DTRNITTKSDCLLANYRWTRRKYNFDNLGQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQ
PVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEEQRLREEKRLRILE
KKRRSKEKDGSEAQQRPYYADYSPVRLTIHTLCTSHYLDLFITVIIGINVVTMSMEHYNQ
PQYLEEALKYCNYLFTCIFIIETLLKLVAFGLHRFFKDRWNQLDLAIVLLSIMGITLEEL
KMNASLPINPTIIRIMRVLRIARVLKLLKLATGMRALLDTVMQALPQVGNLGLLFMLLFF
IYAALGVELFGKLGCSDSNPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLREC
LPEERSCLTYLPLMSPVYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIA
LEMERARRLSSASNASALGGAYAGPRPHSPGQEEEVSAARRRSFCRQGSCPYPGCILSLT
TATCFLLYDLLAPPTLYRNTPAPSTKPQAV
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgggacagcacagtcgtcctcggctgctgtaccagctggctggcgtggtgccctctcca
ctactcctggagctgttgagctgtcctctgtgtacccgcgccctagaggacatggagctg
gacctgagcgacctggagggttctaggggagaggcccacgccctgcacgacttcccccag
ggaggagaggggctcggcggccgcgggaggcgccggcggaaggcagggctgggggtaggg
ctggggctcggggtgaagagggtcagtaacaggctggtggaactggggaatggattcaga
gacagactgaaacgcatcgtagacagcaagtacttcaacagagggatcatgatctccatc
ctcatcaacactctcagtatggggatagaataccatcaacagccggtggagttgactgac
atcctggagatcagtaacatagtgttcacctgcatgttcctcctggagatggccttcaag
ctgctggcctttggcctcttcggctacatcaagaacccctacaacatcttcgacggcatc
atcgtcatcatcagtgtctgggagatcattggacaggcggacggcgggctgtccgtcctg
cggacgttccgtctgcttcgcgtgctgaagctggtccggttccttcctgccctgcgcaga
cagctggtggttctgatgaagactatggacaacgtggccaccttctgcacactactgatg
ctcttcatcttcaccttcagtatcctcggcatgcacctgtttgggtgtaaattcaacctg
cagatggagaatggagacaccatcccagaccgcaagaactttgactcgttactctgggcc
atcgttactgtgttccagatcctgacgcaggaggactggaatgtggtcctgtataacggc
atggcctccacctctcctctcgctgctctctactttgtagctctgatgacgtttggtaac
tacgtcctcttcaacctgctggtggccatcttggtggagggcttccaggcggagggtgat
gccaaccgggcggactctgacgacgacaagaggtctgatgacgacggggaggaagaggag
aagaaggaggctggagagctgaaagatacagagctgaagatgtattctctgatgatgacg
gccaacggccacgcggaacgcgaccctctggcccctcccataatgatcacgcgcacgggg
gcgacgcccaggagctcattgggccccgagtccgtcccgggagacgggctggtggacgga
gacgtgtgttcagggatggactgcgggggttctcgtcgccgcggcagcgctgctgcttcc
gtagacacctcagcctacgaccagcgctctctgtccagccccggccagcactcgcccctc
cctcctagaggtcagggttcagtcagtgggtggggcagcagaaggtcaagttggaacagc
ctcaaccgcgcccccagcctcaaccgcgcccccagtctcaaacgtagcaaaaccagcggc
gagagggagagtctcctctcaggggagggaggaggaggggaggaggaggaagaggggtcc
ttagagctgctgcaggtgtcctctctgggcccgtcggtaacaggggagtacggggactgt
aacgggaggagtcttcatcacatgacctacgaccccaacaaggataacctttcgcctgac
gatgacatggaggaggacaacctgtggttccgggtcaggagaacgctgctgagccaccag
ccaggctggtgtagagaacataaagactggaacctttacctgttttcccctcagaactcg
ttccgtgtgtgggctaaggggatgatctctcataagatgtttgatcacgtggtcctgatc
ttcatcttcctgaactgcatcaccatcgctctggagagacccggcatacagccgcacagc
accgagcgagtgtttctgactgtctccaactacgtgttcactgtcatcttcctggctgag
atgactgtcaagattgtagcgttggggttctgctggggtaaacagagctacctgaagagc
agctggaatgttctggatgggatcctggtgtttgtctctctggtggacatcctggtgtct
ctggccttgaccggagggaaccgcatcctgggaatcctcagagtactacgactgctacgc
acgctacgacctctcagggtgatcagtcgagccccagggctgaagctggtagtagagact
ctgatcacgtctctgagacccatcggaaacatcgtcctcatctgctgcgctttcttcacc
gtgtttggaatactgggtgtacagctgttcaagggtaaattctacctctgtgaaggcctg
gacaccaggaacatcaccaccaagtcagactgtctgctggccaactaccgctggacccga
agaaaatacaacttcgacaacctgggacaggcgctgatgtctctgttcgtgctgtcctgt
aaggatggatgggtcaacatcatgtatgatggcctggatgcagtgggagtagaccagcag
ccggtgaggaaccacaacccgtggatgctcctctacttcatctccttcctcctcatcgtc
agtttcttcgtcctcaacatgttcgtgggcgtggtcgtggagaacttccacaagtgtcga
caggaccaggaagaggaggagcagcggctacgggaagagaagaggctcagaatcctggag
aaaaagcgcaggagtaaggagaaggatgggtccgaggcccaacagagaccctactatgcg
gactactccccggttcgtctcaccatccacacgttgtgcaccagccactacctggacctc
ttcatcaccgtcatcatcggcatcaacgtcgtcaccatgagcatggagcactacaaccag
cctcagtatctggaggaagctctgaagtactgtaactacttgtttacctgtatcttcatc
atcgagacgctgctgaaactagtggccttcggactgcacaggtttttcaaggacaggtgg
aaccagctggacctggccatagtgctgctgtccatcatgggcatcactctggaggagctg
aaaatgaacgcatcattacccatcaaccccaccatcatcaggatcatgagagtcctgagg
atcgctcgagtgttgaagctgttgaagctggctacagggatgagagctctactggacacg
gtcatgcaggccttgccgcaggtggggaatctgggtctcctcttcatgctgctgttcttc
atctacgcagcgctgggagtagagctgtttgggaaactggggtgtagcgacagtaatccg
tgtgagggtctgagtcgccacgccacctttgagaactttgggatggcgttcctcacgctg
ttcagagtctctactggggacaactggaacggcatcatgaaggacacgctgcgtgagtgt
ctcccagaggagcgttcctgtctgacctaccttcctctgatgtctccggtctacttcgtg
accttcgtcctcatggcccagttcgttctggtcaacgtggtggtggcggtgctgatgaaa
cacctggaggagagcaacaaggaggccaaggaggacgccgagatggacgccgagatcgcg
ctggagatggagagagctagacgtcttagctccgcctctaatgcgtcggcgctgggcggg
gcttacgcggggccacgcccacactcacctggtcaggaggaggaggtcagtgcagccagg
aggaggagcttctgtcgccaaggaagctgtccgtatccaggatgcattctctccctaacg
acagctacatgtttcctcctgtacgacctgctagcgccccctaccctctacaggaacaca
ccagcccccagtaccaagcctcaggctgtgtga
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