Salmo trutta (river trout): 115187899
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Entry
115187899 CDS
T08542
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115187899
09123 Folding, sorting and degradation
03018 RNA degradation
115187899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115187899
03041 Spliceosome [BR:
stru03041
]
115187899
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115187899
mRNA cycle factors
Stress granule specific factors
115187899
Spliceosome [BR:
stru03041
]
Complex C
Other components
Complex C specific factors
115187899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RBD_RDR6
RRM_7
RRM_5
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
115187899
NCBI-ProteinID:
XP_029602813
Ensembl:
ENSSTUG00000027233
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDITEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLRELFGKYVPGPALSIRVMTDDSGKSRGFGFVSF
ERHEDAQRAVDEMNGKDFNGRQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYV
KNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV
ATKPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQTQN
RAAYYSTNQLAQLRPGPRWATQGVRPQHFQNMPNAMRPSAPRPQTFGAMRPSSSQVPRMM
AGQRMATQALGQRPAGAAAAAAPVRMPQYKYAAGVRNPQQHMASQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKESAQKPTNPAGVPS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaagcgcaccgagttacccgatggcttccctgtacgtcggcgacctgcaccag
gacatcaccgaggccatgctgtacgagaagttcagccccgccgggcccatcctctccatt
cgggtctgcagggacatgatcacacggcgatctctaggatatgcctatgttaatttccaa
caaccagccgatgctgaacgtgccctggacaccatgaacttcgacgtcatcaaagggaga
cctctgcgtatcatgtggtctcagcgtgacccttccctgaggaagagcggagtgggcaac
attttcatcaagaacttggacaagtctattgacaacaaggccctctacgacaccttctca
gctttcggaaacatcctatcgtgcaaggtggtttgtgatgagaatggctcaaagggatat
ggctttgtgcactttgagacccaggaagctgctgaaagagccattgagaaaatgaacggc
atgctgctcaatgacagaaaagtgttcgtcggacgcttcaaatcccgcaaagagcgtgag
gccgagcttggagccagagccagagagttcaccaatgtgtacatcaagaactttggcgaa
gatatggatgatgagaagctgagggagctgtttgggaaatatgttccaggaccggccctg
agcatcagggtgatgacggacgacagcgggaagtccagagggttcggcttcgtcagcttt
gagaggcacgaggatgctcagagggctgtagatgagatgaacgggaaggattttaacggc
cgccaggtctacgtcggccgcgcccagaagaaaggagagcgccagacggagttaaaacgt
aaattcgaacagatgaaacaggatcgtatgacccggtaccaaggggtcaacctgtacgtt
aagaatctggacgatggcctcgacgacgagcgtctgaggaaagagttctctcccttcggt
accatcaccagcgccaaggtgatgatggagggtggtcgaagcaagggcttcggcttcgtg
tgtttctcctcgccagaggaggccaccaaggccgtgacggagatgaacggccgcatcgtg
gccaccaagccgctgtacgtggcgttggctcagaggaaagaggagcgccaggctcacctc
accaaccagtacatgcagaggatggccaccgtccggcccgtacccaacccagtcctcaac
ccctaccagcctgcacctccctctggttacttcatggccgccatcccacagacacagaac
cgcgctgcctactactccaccaatcagctggctcagctgagaccaggcccacgctgggcc
acccagggtgtccgaccacaacacttccagaacatgcccaatgccatgcgtccgtccgcc
cccaggccgcagacctttggtgccatgaggccctcgtcctcccaggtgccccggatgatg
gccggccagagaatggccacccaggccctgggccagcgtcctgccggtgcggcggctgct
gcagccccagtgaggatgccccagtacaagtacgcagcaggtgtgaggaacccccagcag
cacatggctagccagccccaggtgcccatgcagcagcctgctgtccatgtccagggacag
gagcctctgacggcctccatgctggcggctgctcctcctcaggaacagaagcaaatgttg
ggtgagcgtttgttccctctcatccagaacatgcaccccagcctggctggaaagatcacc
ggcatgctgttggagatagataactctgagttgctccacatgctggagtctcccgagtct
ctccgctccaaggtggatgaagctgttgccgtgctgcaggctcaccaggccaaggagtcg
gcccagaagcccaccaaccctgctggagtccccagctaa
DBGET
integrated database retrieval system
