KEGG T08542: 115188905

Salmo trutta (river trout): 115188905

Entry

115188905         CDS       T08542

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like

K14404

cleavage and polyadenylation specificity factor subunit 4

Organism

stru Salmo trutta (river trout)

Pathway

stru03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:stru00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115188905
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:stru03021]
    115188905
   03019 Messenger RNA biogenesis [BR:stru03019]
    115188905
Transcription machinery [BR:stru03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     115188905
Messenger RNA biogenesis [BR:stru03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     115188905

SSDB

Motif

Pfam:

zf-CCCH Torus zf_CCCH_4 zf-CCCH_3 zf-CCCH_2 zf-CCHC zf-CCCH_12 zf-CCCH_4 zf-CCCH_RBM22 zf-CCCH_DUS3L zf-CCHC_3 Nab2-like_zf-CCCH_ zf-C3H1

Other DBs

NCBI-GeneID:

115188905

NCBI-ProteinID:

XP_029603597

LinkDB

Position

Unknown

AA seq 277 aa
MQDLIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRAACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICMNYLVGFCPEGRSCKFMHPRFELPMGATEQPP
LPAQILGHQKPLPSLGRSSLSLIQLTNPGGGAGPHQHQHHQRQPYSSGPSMHQHHNNMGG
GNRGPRPLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ

NT seq 834 nt +upstreamnt +downstreamnt
atgcaggacctgatagccaccgtggaccacatcaagtttgatctagagatagctgtggag
cagcagctgggggctcagcctctccctttccccgggatggacaagtccggggctgctgtg
tgtgagttcttcatgagagcagcctgtctcaaaggtggaatgtgtcccttccgtcacatc
agtggggagaagacagtggtgtgtaaacactggctcagaggactctgtaagaagggagat
cagtgtgagtttctacacgagtacgacatgaccaagatgcccgagtgttacttctactcc
aagttcggagagtgcagtaacaaggagtgtccgttcctccacatcgacccagagtctaag
attaaagactgcccctggtatgacagaggcttctgcaaacatggtccagactgcagacac
cgccacaccagaagagtgatctgtatgaactacttggttgggttctgtccagagggccgg
tcctgtaaattcatgcacccgcggtttgagctgccgatgggagccaccgaacagcctcct
ctaccagcacagatactgggacaccagaagccgttgccttcgcttggccgctcgtccctg
tcactcatccagctgaccaatcccggtggaggggcgggtcctcaccagcatcaacaccat
caacgccagccgtactcctccggtcccagcatgcatcagcaccacaacaacatgggagga
gggaacagggggccacgcccactagaccaggtcacctgctacaagtgtggtgagaagggc
cactacgccaacaaatgcaccaaaggacacctggccttcctcagcggacagtaa

DBGET integrated database retrieval system