Salmo trutta (river trout): 115189028
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Entry
115189028 CDS
T08542
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115189028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115189028
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115189028
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115189028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
115189028
NCBI-ProteinID:
XP_029603709
Ensembl:
ENSSTUG00000000675
LinkDB
All DBs
Position
3:complement(74082251..74093916)
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AA seq
960 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLLSFSSSANSGSSSSSSSLVSMAAVV
GGNPGIPTSNSLIGSFSSAVQQHQPQPPQQPILQPLQQPQQPQTKPCTPSPPSHPLLSTA
PSLPTPTTPISVSPNSLPQVSSGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSA
SLNTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGL
GLLGSSPAHSSLTGGILGLVPGQSVIPGPPQIPLSPVGAAPGGAVGMMGGNGGSMGPIGG
GVGSNIIPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDN
GPSLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMEPRMSA
QAPEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSG
SSAAPGTPAVPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSER
IRQYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKK
QSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggccttgggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccgacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgttgtccttttcctcg
tccgccaattccgggtcctcttcttcttcctcctctcttgtatccatggccgccgttgtc
ggaggcaaccctgggattcccacaagcaacagtctaataggaagcttcagcagcgccgtg
caacaacatcagcctcaacctccacagcaaccaatcctgcagccactgcaacaaccacaa
caaccccaaacaaaaccttgcacccccagcccacccagccaccccctcctctccaccgcc
ccctctctccccacacccactacacccatctcagtctccccaaactccctgccccaggtc
tcgtctggtcatatcctcaactccagcctagggcttgggttgggcctgggtaaagttggc
atgacggggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcc
tctctgaacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggca
gctgcgttgggaggcctgggtctgagtaccaccacccagtccagtgtctcagtggagagc
tcctccatccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctg
ggcctgctggggtccagcccagcacacagctccctgactggggggatcctgggcctggtg
cctgggcagagtgtgatccctgggccccctcagatccctctcagcccggtcggtgctgcc
cctggaggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggagga
ggagttgggtcgaacatcatccctgccagaccgcccagtggactgaagcagaacggaagc
acaagttacagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagc
caatcacagagcagccagccttcctcgctgacctcctcagccagtcagcctatggacaac
ggtcccagcctcatcagctccatcaccttgccccccagctctccgtccccctcgttttcg
gacagtatccccggtggtgggagtctcctcaacggaccccactcctacacacaggcctct
gagggcctcaagcttcctacagacctccgtcagatactgatggagcccagaatgtcagcg
caggccccagagccaccaggggccatggcaacagccactaacacacgaaagagaaagcag
tgtcaggccccggagcctctgagttctctgaaggcgatggctgagagagcagcattagga
tcaggtctggatggagagatccccaacctgcacctcacagacagagacatcttctctggt
tcgtcggctgcccccggcacgcccgcggtcccccagccctccctgtcggaggtgagcatc
cccccttccctgggggtgtgtcccctgggtcccactcccctctccaaggaccaggtgtac
cagcagaccatgcaggagtctgcttggacacacatgccgcacccctcagactccgagagg
atcaggcaatacctgatgaggaacccatgccccaccctgccattccatcatcagatgccc
ccccaccactcagactctatagagttctaccagagactgtccacagagactctcttcttc
atcttctactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaag
cagtcgtggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaag
actatcactgatgagtttgaacagggcacttacatctactttgactatgagaagtggggt
cagaggaagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcag
tga
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