Salmo trutta (river trout): 115189495
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Entry
115189495 CDS
T08542
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115189495 (ddx1)
03016 Transfer RNA biogenesis [BR:
stru03016
]
115189495 (ddx1)
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115189495 (ddx1)
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115189495 (ddx1)
Transfer RNA biogenesis [BR:
stru03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115189495 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
115189495
NCBI-ProteinID:
XP_029603968
Ensembl:
ENSSTUG00000046157
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MAAFSELGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFTIPV
IQIVYETLKDQQEGKKGRTAVKTGGAVFNKWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKAITKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTMGCYLDLDNGHLSFSKNGTDLGLAFEIPAPLKNQPFFASCVLKNAELKF
NFGGEEFKNPPKTGFVAVDQAAEGHVVKSSQTGSVKVSEVKSSSCGPKALIVEPSKELAE
QTLNNVNQCKRYVDNPKLRDLLIIGGVPARDQLAVLEQGVDIVVGTPGRLDDLISTGKLT
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKHDRSWERLDRKNHILTDEVHAKDNTRPGA
NSSEMWSEAIKILKGEYTIRAIREHNMDQAIIFCRTKIDCDNMEQYFIVQGGGPDRKGHQ
LSCVCLHGDRKPNERKTNLDRFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNY
VHRIGRVGRAERMGLAISLVAMEKEKVWYHTCANRGRGCYNTRLKEDGGCTIWYNEKELL
SDVEEHLKCTITQCEPDIKVPVDDFDGKVTYGKRRAAGGGNFSGHVAALAPTVQELANLE
REAQTSFLHLGYLPNQLFKAF
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaactgggcgttatgcctgaaatcgcacaagcagtcgaggagatg
gactggctccttcctacagacatccaggcagagtccattccgttgatcttgggaggagga
gatgtactcatggcggcggagactggaagtggaaagacaggggccttcactatcccagtg
atccagatagtgtatgagactctgaaggaccagcaggaggggaagaaggggagaacagct
gtgaagactggtggagcagtcttcaacaaatggcagatgaacccgtatgacagaagcaca
gctttcgccattggaccagacggactgtgttgtcaaagcagggagtttaaagaatggcat
ggctgtcgctctaccaaagccatcaccaaggggaagtactactatgaggtatcatgtcat
gaccagggcctgtgtaggatcggctggtctaccagccaggcagctttggacttaggtact
gataagtacggctttggcttcggaggaacggggaagaaatctcacaacaaacagtttgac
agttatggagaggagttcaccatgcacgacaccatgggatgttatctggatctggacaac
ggacacctctccttctccaaaaacggtactgacctgggcttggcgtttgagatcccagct
cctctgaagaaccagcccttctttgcttcctgtgttctcaagaacgcagagctgaagttt
aactttgggggggaggagtttaagaatccccccaagacgggcttcgtggcggtggaccaa
gctgctgagggacatgtggtcaaatccagccagacaggcagcgttaaggtgtcggaggtg
aagtcttcgtcctgtggtcccaaagctctgatcgtcgagccgtctaaagagcttgctgaa
cagaccctcaacaacgttaaccagtgtaagagatatgtggacaatcccaagctcagagat
cttctgatcattggaggggttcctgctagggaccagctggctgtactggaacaaggggtg
gacatcgtggttgggacaccaggtcgtctagatgacctcatctctacggggaaactcacc
ttgtctcaagtccgcttcctggtcctggatgagtgtgatggtctcctcactgctggctac
accgactttatcatgagaatctacaaccagattcctcaagtcacctcggacggcaagaga
cttcaggtgatagtctgctcagcgacgctccactccttcgacgtgaagaagctgtcagag
aagatcatgcacttccccacctgggtggacctgaagggagaggattctgtccctgagacc
gtccatcacgtggtcgtacccgttaaccctaaacacgaccgcagctgggaacgcctcgac
cgcaagaaccacatcctgactgatgaggtccatgctaaagacaacaccagaccaggagcc
aacagctcagagatgtggtctgaggccatcaagatcttgaagggggagtacaccatcaga
gccatcagggaacacaacatggaccaggccatcatcttctgtaggaccaagatagactgc
gacaacatggagcagtacttcatagtacagggaggaggtccagatagaaaaggccaccag
ctttcctgtgtctgtctccatggtgacaggaagcccaacgaacgcaagaccaatctggac
cgattcaagaaacaggaagtgaagttcttgatctgtacagacgtggcggccaggggcatc
gacatccacggagtcccctacgtgatcaacgtgactctgccagatgagaagcagaactat
gtccatcgcatcggcagagtggggagagcagagaggatggggttggccatctctctggtt
gccatggagaaggagaaggtgtggtatcatacctgtgcaaaccgcggtagagggtgttac
aacaccaggctgaaggaggacggggggtgtaccatctggtacaatgagaaggagctgctg
tccgacgtagaagaacatttaaagtgcaccatcacccagtgtgaaccggacatcaaggtt
ccggtggacgactttgacggcaaggtgacctacggcaagcgcagagcagcaggaggtggt
aactttagtggtcacgtggctgcattggctcctacagttcaggaactggccaatctggag
agagaagctcagacgtccttccttcatctgggttacctgcccaaccagctgttcaaagcc
ttctga
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