Salmo trutta (river trout): 115189950
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Entry
115189950 CDS
T08542
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
stru03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115189950
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115189950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115189950
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
115189950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
115189950
NCBI-ProteinID:
XP_029604325
Ensembl:
ENSSTUG00000029895
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MADGVDHIDIYADVEEDFNQESDYPAHDQIDLYDDVISPSANNNGDAPEDRDYLDNLPPP
AGSEGNKSTPPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIGSIGIKDLLEIKFFENRA
NGQSKGFALVCVGSDASSRKLLDLLAKRELHGQNPIVTPCNKQSLSQFEMQSRKSPGTSG
GQMSGDGKAGPPTMGPRGGFPMGMGRGRGRFPGPPGPGGDRFPGPIGPGGPPPHFPGSGM
RPPELINHRHQEGHLMDMNFNCFPPGRDGNWRPRGGMQGPPRPPPGPLGPPGPLGPPPPG
QGLPPPMQGPPNRGDRPPPPVMFPGQFGQPPMGPLPPGPPPHGFGPPPGPPPPQQGPPPP
GHFPPRPPGPLGPPLALAPPPHMTGPRPGGPPPAPHVNPAFFPPPGGPNNMGGPPGGDGR
GPNGPNDPYGRPPPYDRGDFGPAGSNQRPPLICEFDLRAPLPRGCPDPWINEGLVDLKNG
GQHLHNASDPGEMESARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIENKSYGSASSSAPKRRERSRERDHSRSRE
KSRRHKSRSRDRHEDYYRERSRERERHRGDRERERERDREREYRHR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggagttgatcacatcgacatctacgccgatgttgaagaggatttcaaccag
gaatcagactaccctgcccatgaccagatagacttgtatgacgatgttatctctccttcg
gccaataataacggagacgcacctgaggaccgggactacctggacaacctacccccacct
gctggctccgaggggaacaagagcaccccgcccaacgtggtttacacgtacactggcaag
aggatcgccctgtacataggcaatctcacatggtggacaacagacgaagatttgacagac
gccattggatcaataggcattaaggatttgctggagatcaagttctttgagaacagagcc
aacgggcagagtaaagggtttgccctggtgtgtgtgggctcagacgcgtcctctaggaag
ctactggacctgctggctaaacgggagctacacggacagaaccccattgttaccccctgc
aacaagcagtccctcagccagttcgagatgcagtctcggaaaagcccaggtacatcgggt
gggcagatgtccggcgatgggaaggcgggaccccccaccatgggcccccgcggtggcttc
cccatgggcatgggtaggggccgaggccgcttccctggccctcctggccctggaggagac
cggttccctgggcccatcggacccggagggccaccgccacacttcccagggtcggggatg
aggccacctgaactcattaaccatagacaccaagaaggccacctgatggatatgaatttc
aattgcttcccgccgggacgtgatgggaattggcgacccagaggtggtatgcagggccca
cctcgaccccctcctggcccactaggtccccctggacccctaggcccccctcccccagga
cagggcctcccccctcccatgcaaggcccccccaaccgtggcgaccgcccaccacccccg
gtcatgttccccggccagtttggccagccccccatgggtcctctcccccctggccctccc
ccacacggcttcggccctcctcctggccccccacccccccaacagggccctccaccccct
ggtcattttcctcctcgcccccctggtccccttggaccgcctctggccctcgctccccca
ccacacatgaccgggccccgacctggaggtcccccaccggctccccatgtcaacccagcg
ttcttccctcctcctgggggtcctaacaacatggggggccctcctggaggggacggcagg
ggccccaacgggcccaacgacccctatggacggccacctccatatgaccggggagacttc
ggacccgccggcagtaaccagcgtcccccgctaatctgtgagtttgacctcagggccccc
ctgccccgcggctgcccagacccctggattaacgagggtttggtcgatctgaaaaatggc
ggccaacacttgcacaatgcgagtgacccaggggagatggagtcggcgcggacaccgctg
agtgaggcagagtttgaggagatcatgaaccggaaccgagccatctccagtagtgccatc
tctagggcggtgtcagatgctagcgctgctgactatggcagtgccatagagactctggtg
acagccatctctctgatcaagcagtctaaggtatctgctgacgaccgctgcaaagttctc
atcagctctctgcaggactgtctccacggcatcgagaacaagtcctacggctctgcctcc
agttctgcccccaaaagacgcgagaggtcgagggagcgtgaccacagccgatcccgggag
aagagccggcgccacaagtcccgtagccgcgaccgccacgaggactactaccgcgaacgc
agccgggagcgagaacggcaccgcggggacagagaacgtgaacgcgaaagagaccgtgag
agggagtaccgacatcgttag
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