Salmo trutta (river trout): 115190787
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Entry
115190787 CDS
T08542
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115190787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115190787
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115190787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
115190787
NCBI-ProteinID:
XP_029604721
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MSAEEAADKTTPADASTGDGGDEEEEWLYGDDDERADEEEAKLTAAVSAPVPATESDEAV
TTGNGVEAQEKEPGDDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTAG
ARPYGTGNKLKGVDLEAPGNINGVPVVEVDMETFEEKPWRKPGADLSDYFNYGFNEDTWK
GYCDKQKRLRMGLEVVNISSTTSKITVQQGRTGNEKEVSLPIHTSKPDFPTPASLYKSSM
NMNTTRISPPQWTAPPVQDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLEGNNIQVIS
EHSSSDAEPNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLIPPPRIPMNVPPPGF
PPPSGPPPSLIPTLDSSGHPGGYDGRPVPPYPFPTGGFPPPMTGGYPPPMPGVVSPWPPM
MDQSKQWDYYPPAGPGPGPRREDKREKERERPRERPHEREREREHSPSTMAYNSDEERYR
GYREYQAERGYSGGDRGGGDRGGGERGGVDRGGDRGGGERGGDRGSGGERGGGGGERHRE
RSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGKEPS
DDMGGDQENQDTME
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaggcggcagacaaaacaaccccggccgacgcgagtacgggagatggc
ggagacgaggaagaagagtggctgtacggagatgatgatgagagagctgatgaggaagag
gccaaactaaccgctgctgtcagtgcacctgttcctgctactgagtcagatgaggccgtt
actacaggcaacggagtggaagctcaggagaaggagccaggagatgatgatgacagtgat
agcgacagtgacgatgatgacgatgatgttcgcgtcaccatcggagacatcaagaccgga
gccccacagtacacaacgtatggagtggctcctgttaacctgaacataaagacagcggga
gccagaccctatggaacagggaacaagttaaagggtgtggatctggaggccccaggcaac
atcaatggagtcccagtagtggaggtggacatggagacattcgaggagaagccgtggagg
aaaccaggtgctgacctgtctgactactttaactatgggttcaacgaggacacgtggaag
ggctactgcgacaaacagaagaggctgaggatgggcctggaggtcgttaatatctcctcc
accaccagcaaaatcactgttcagcagggcaggacggggaatgagaaggaagtgagttta
cccatccacacgtccaaacctgacttccccactccagccagcctctacaagtcatccatg
aacatgaacactaccaggatctcccccccacagtggactgctcctcctgttcaggacatg
tcctactatacgaagaccagtggtactatcgacgtgatcggaggagggactgctaccatc
agcagagtggagggacgacgaagacacaacctggagggcaacaacatccaggtgatttcg
gaacactcgtcgtcggacgctgagccaaaccccaacaagatgccccctttcttccccccc
ggccccctccccccgaacatccctcctcctccattcctcccccctcctcccaacgtcagc
caggctccccctctcatccccccaccaagaatacctatgaatgtccctcctcctggtttc
cctcctcccagcggcccccctccctctctcatccccaccttggacagcagtgggcatcca
ggtggatatgatggccgtcccgttccaccataccccttccccacaggtggtttccctcct
cctatgacaggtggctaccctcctcctatgccaggtgtggtgtctccatggcctcctatg
atggaccagtctaaacagtgggactactaccctccagcaggaccgggaccaggacccaga
cgggaggacaagagggagaaggagagagagagacccagggagagaccacatgagagggag
agggagagagagcacagcccctccactatggcttacaacagtgatgaggagcggtaccgc
ggttaccgggagtaccaggcggagcgtggctacagcggcggtgaccgtggaggaggtgac
cgtggagggggggagcgtggaggcgtagaccgtgggggtgaccgtggagggggggagcgt
ggtggtgaccgtggcagtggtggtgagcgtggtggtggtggaggggagcgtcacagagag
aggtcgagccgtgagaaggaagagagacacagagagagaagacacagagagaaggaggag
gggagacacaagtcatcacgcagtagcagcaggaggagacatgatagtgaagaaggagac
ggtcacaggagacacaaacacaagaagagcaagagaagcaaggagggcaaggaacctagt
gatgacatgggaggagaccaggagaaccaggacaccatggagtga
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