Salmo trutta (river trout): 115190915
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Entry
115190915 CDS
T08542
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
stru00535
]
115190915
Proteoglycans [BR:
stru00535
]
Extracellular matrix (ECM) proteoglycans
Others
115190915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_Tor_3rd
Pur_ac_phosph_N
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
115190915
NCBI-ProteinID:
XP_029604810
LinkDB
All DBs
Position
Unknown
AA seq
1785 aa
AA seq
DB search
MLIVGLPIRTWCPLLFLVLAVHFPAPAQGQVPAPRRLRFKVLGTSKLHVSWKEPKGNVDG
YRVLYHSEPGKEKKELRVSKGDNKVVIQDFDAMKEYHVRVLAVRGNQQSRALQGKYAAED
LEGEGGEGESTLPLRLDDTGGTEEINEISGADPFVCTTQAIADIVILVDGSWSIGRLNFR
LVRMFLENLVNAFSVGIDQTRIGLAQYSGDPRIEWHLNAFTTKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPAQSLRDAGIELFAIGVK
NADENELRAIASEPDNTHVYNVADFSIMSSIVEGLTQIVCERVEEQDKEIKGESAGQETQ
GAPQDLVTSEVTARSFRVSWSHAPGGVEKYRVVYYPATQGGRPEEAVVDGTENSVVLRYL
NSLTEYQLAVFAVYTSTASEALRGSETTLALPMVNGLELYDVTHNTMRARWSGVQGVSGY
MVLYAPLTKDGASDEKEMKVSDAVTDLELEDLTPATEYTVTVYAMYGEEASDPMTSQQTT
LPLSPPKNLVFSEVDHNSAKLSWEAASRKVTGYRIMYVKTDGLKTDEVDVGPVTSWTLND
LTSAREYEVAIFGIYDEGQSEALSGSFTTDPVPGPLDLQASEVTADSFRVSWGHSAPGIV
LYKLTWAPYDGGDTKELVLSGDVDSFLLSGLSPNTEYEVMLQAIFNDQSESDAVLVVETT
LARTTTVATTTPVVRQAVRGLQVQEETTYSLEVSWQLEDPKVDQYRVTYVSLTGDRNEES
VLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGISVSSVGRTLPLSAPSNLRVSEEWF
SRFRITWDTPPSPTLGFRVVYQPTSVPGSALETFVGDDVNTMLILNLQSDTEYTVKVISS
YTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSMCVQWQPHRQADLYRVVIESLLNGQKQE
VSVGGSASRQCFYDLTPNSQYKISVSTQLQDMEGPAVTTITTTLPVPTQPPTPPPTSPPL
PTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDLIGPDGTQVAIAQ
FSDDARTEFKLNSYANKETLLDAIRRITYKGGNTKTGRAIKHVKESIFTSEGGVRRGVPK
VLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMDMFGLVEKEYSNVEGVSLEPGSF
NSFPCYRLHKDALVSQPTKYLHPEGLPSDYTITFLFRLLPDTPQEPFALWEILNKDNEPL
VGVILDNGGKTLTFFNYDYKGDFQTVTFDGPDIKKMFYGSFHKLHMAISKTTARVVVDCK
VVGGKPINAAGNISIDGVEVLGRMVRSRGKRDNSAPFQIQMFDIICSTSWASRDKCCELP
GLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAGIRGARGDRGEPGNVGPQGLVGDKGP
PGPQGPPGPQGPSGHSIQGPPGGDGEKGEKGDIGLPGPQGISGSPGGPGRDGPVGQRGLP
GKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGDQGPPGSAGTKGDKGERGDLQSQATV
RALARQVCEQLIQSHLSRYSSILNQIPSQSVSVRTVPGPPGEPGRRGLPGPQGEGGPTGR
PGFPGTNGQDGRPGERGLPGEKGERGSQGVGTQGPRGPPGPPGLLGEGRTGSQGPAGRPG
SQGTPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGEGQEQEYENDY
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgtaggactcccaataaggacgtggtgtcctctgctcttcctggtgttggct
gtacatttcccagcccctgcccagggtcaagttccagctcccagaagattacgttttaaa
gtgctgggtacgagcaaattacatgtatcttggaaagagccgaaagggaatgtcgacggc
tatagagttttataccacagtgagccgggcaaagagaaaaaggagctgcgcgtttcgaag
ggggataataaagtggtgatacaggactttgatgccatgaaggagtaccacgtcagggtt
ctagctgtgagagggaaccagcagagcagagcactacaagggaagtatgcagctgaagac
ctggagggtgagggaggagagggtgagagcacattgcctctgagacttgatgacaccgga
gggactgaggagatcaacgagatatctggagcagatccttttgtctgtacgactcaggcc
atagctgacatagtgatcctggtggatggatcctggagcatcggcaggctcaacttccgc
ttggtccgcatgttcctggagaacctggtcaacgctttcagcgtcgggatcgaccagacc
aggataggtctggcccagtacagtggggaccccaggatagagtggcatctgaatgccttc
accactaaagatgcagtcctggatgctgtgaagaacctgccctataagggaggcaacaca
ctgacaggcctggccctgacctatatcctggagaacagcttcaagccggagtcaggctcc
aggagcggcgtacccaaagtcggtatcctaatcacagatgggaagtcccaggatgacgtg
atcccccctgcccagagcctgagggacgctggcatcgaactcttcgccatcggtgtaaag
aatgctgatgagaatgagctgagggccatagcttctgagcctgacaacactcatgtgtac
aacgtggcagacttcagcatcatgagctctatcgtagagggactgacccagatagtctgt
gaacgggtagaggagcaggacaaggagatcaaaggagagtctgcaggacaggagacacag
ggagcccctcaggacctagtgacatcagaggtgacagccaggagtttcagggtgtcctgg
agtcacgctcccggcggtgtagagaagtaccgtgtggtgtactaccctgctacccaggga
ggacggcctgaagaggctgtggtggacggcacagagaactctgtggttctgcggtatctc
aactccttaacagagtaccagttagctgtgtttgctgtctacaccagcacagctagcgag
gcacttcgtggcagcgagaccacattggctctccccatggtgaacggcctggagctgtac
gacgttacccacaacaccatgcgggcgcggtggagcggtgtgcagggcgtctcggggtac
atggtcctatacgcccccctgaccaaggacggggcctccgacgagaaagagatgaaggtg
tcagatgcagtaactgatctggagctggaggacttgactcctgctacagagtacactgtg
acagtctatgccatgtatggagaagaagctagcgatcctatgactagccagcagaccacc
ttaccactgagccctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaa
ctgtcatgggaagctgcctctaggaaggtgacaggataccgcatcatgtacgtcaagact
gacgggctaaagactgatgaggtggatgtgggtccagtcacgtcctggactctgaatgac
ctgacgtctgcaagggagtatgaggtagccatctttgggatctacgacgagggccaatca
gaagccctctctggcagcttcaccaccgaccctgtgccaggccctcttgacctccaggcc
agtgaggtcaccgcagacagcttccgggtcagctggggtcactctgctccgggaatcgtc
ctctacaaactgacctgggctccttatgatggaggggacactaaggagttggttctaagt
ggtgatgtggactccttcctcctcagtggactgagccctaacacggagtatgaagtgatg
ctccaagccatcttcaacgaccaatcagagagtgatgcagtgttagtggtggagacaaca
cttgccaggacaacaacggttgccactacaacgccagtggtacgtcaggcggtgagaggc
ctgcaggtccaggaggagaccacctacagcctggaggtgtcatggcagctggaggatcct
aaggtggaccagtacagagtcacctacgtcagcctcacaggagaccgcaacgaggagtca
gttctggtgcctgggcagcagaccacagttcttctccagcctctgctgtctgacacagag
cacaaggtgacggtcaccccagtctacacagatgggcaggacggcatcagtgtgtcttct
gtgggcagaacattgcccctctcagcgcctagcaacctgagggtgtctgaggagtggttc
agccgcttccgcatcacctgggacacgcctccttctcccaccttgggcttcagggtagtc
taccaacccacatctgtgccggggtcagctctggagacttttgtgggagacgacgtcaac
accatgctgatcctgaacctgcagagtgacactgagtacactgtgaaggtcatctcttcc
tacaccacgggatccagccaaccactccagggcaccgccaagacattgtatctgggcgtg
accaacctgaacacctaccaggtgatgatgtccagtatgtgtgtccagtggcagccccat
cgtcaggctgacctctacagggtggtcatcgagtctctgctcaatggccagaaacaggaa
gtgagtgttggaggctctgcttctagacagtgtttctatgatctgacccctaacagccag
tataagatcagcgtttccacccagctacaggacatggaggggcccgccgtcaccaccatc
actactacactccccgtccccacccagccaccgacaccaccacccacgtcacccccccta
ccgaccataccgcccgccaaggaagtctgtaaagcagccaaagctgacctggtcttcttg
gtggacggctcttggagcatcggagacgacaacttccagaagattatccgcttcctgtac
agtacgatgggagctctggatctgattggtcccgacggcacacaggttgctatagcacag
ttcagtgatgatgccaggactgagttcaagctgaactcatacgctaacaaggaaacgctg
ctcgacgccatcaggcgaatcacatacaagggagggaacaccaagacaggccgagccatt
aagcatgtgaaggaatctatcttcacctcagagggaggagtgaggaggggggttcctaag
gttctggtggtcctcaccgatggccgttcccaagacgacgtcaacaaggtctccaaggag
atgcagatggaaggctacatcatctttgccattggctttgctgatgcagactacggagag
ttggtgaacatcgccagcaaacccagcgacagacacgtcttctttgtggacgatttggac
gctgtcaaaaaaattgaggagcagctgatcacttttgtgtgtgaggctgccactgccact
tgtccgtcggttctgatgagtggcaacactatggcaggcttcaggatgatggacatgttt
ggcctggtagagaaggagtacagtaacgtagagggagtgtccctggaaccaggctccttc
aacagcttcccctgctacagactgcacaaagacgccctggtctcacaacccaccaagtac
ctccacccagaaggtctgccctctgactacaccatcaccttcctgttccgcctgctacca
gacaccccccaggagccctttgcattgtgggagatcctcaacaaagacaatgaacccctg
gtgggggtcatcctggacaatggtgggaagactctgacgttcttcaactacgactacaag
ggagacttccagacagtcacttttgacgggcctgacatcaagaagatgttctatggcagt
ttccacaagctccacatggcgatcagtaagaccacagccagggtggtggttgactgtaag
gtagtgggaggaaagcccatcaacgcggctggcaacatcagtatagacggggtggaggta
ctgggacgcatggtacgatccagagggaagagggacaactcagctccgttccagatccag
atgtttgacattatctgcagcacgtcctgggccagtcgagacaagtgctgtgagctccct
ggactgaggctggaggaggactgtcctgccatgccccatgcctgtagctgttctcaggac
agtaaaggacctcccggacccacaggacctcccggaggtgctggtatcagaggggccagg
ggagatcgaggggagccaggcaatgtggggcctcaaggactagttggtgataaaggtcct
cctggaccacagggcccccctggtcctcaagggcctagtggacattccatccagggaccc
ccgggtggtgatggtgaaaagggagaaaaaggagatattggtttaccaggacctcagggt
attagtggatctcctggcggaccaggaagagatggaccagttggacagaggggcctgcct
gggaaggatggaccacaaggacagcagggtactacagggcccgttggcagtcctggggcc
cccggggcccctggtggaagtggctctcctggacccctgggagaccagggaccacctggc
tctgctggtaccaaaggagacaagggtgaacggggagacctgcagtctcaagctaccgtc
agggccttagcacgccaagtgtgtgagcaactgattcagagtcacctgtctcgctacagc
tccatcctgaaccagatccccagccagtcagtgtctgtgaggacggtaccaggacctcca
ggagagcccggtcgcaggggtctgccagggccacagggagaaggggggcccacaggcaga
ccagggttccctgggaccaacggacaggatggacgaccgggggagagaggtctcccagga
gagaagggggagagggggagtcaaggtgtggggacacagggccccagaggtcccccaggg
ccaccaggtcttctaggagagggccgtacaggcagccaaggtcctgccggtagaccaggc
agccagggcaccccagggcgaccgggcacccctggatccacgggccctgctggtgctgct
ggttactgcgaccagaactcctgtttgggctacaacgttggagaaggacaggaacaggaa
tatgagaatgactactga
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integrated database retrieval system
