Salmo trutta (river trout): 115191044
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Entry
115191044 CDS
T08542
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115191044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stru03000
]
115191044
03019 Messenger RNA biogenesis [BR:
stru03019
]
115191044
04121 Ubiquitin system [BR:
stru04121
]
115191044
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115191044
Transcription factors [BR:
stru03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
115191044
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115191044
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115191044
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115191044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-UDP
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
115191044
NCBI-ProteinID:
XP_029604908
LinkDB
All DBs
Position
Unknown
AA seq
856 aa
AA seq
DB search
MDPMECPLCLESLEIDDANFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEFPAVYN
PLSAEELQRIKNEKKSKQVEKKQKTTENRKHLASVRVVQRNLVFLVGLSQRLADPEILKR
PEYFVKFGKVHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNLVVDGRTLKA
SLGTTKYCSYFLKSMGCPKPDCMYLHELGDDAASFTKEEMQAGKHQEYEQRLLQDLYQNP
SFTTQTSGGETTRSSKPCSLQRSNSNNSHGQDVWPTLQPTGKTTNGVSDHRKSPPSNGGV
SDSEHMTPDGPECAVGLGSVIGLSAFSSSGDPPSPSDALPDVIRSSDTQHGDSSERHNLL
PDSDSPSPPPVLSGPPGFSKASQVVPISVTTRSPFQGAAAESQSLFSDNSNFRHPNPIPS
SLHGFPSTETHNNHDTWSTAPQPHSLFTSDTIPVSSSTDWQAAFGFGSSKQQTSEDDLGF
DPFDITRKALEDLIEKELSIQDSLPSLSISPGPFPPHHHSLLSSVPTKAGSGPPGELIPR
NHFFSGLNSGLSSNHCFSQMHQHHQHPQQRAVYNSFSFPGQPPPSSSSSSSQTSRHPWMT
SSTAVGSAPTRNNFTTHFGGNRTVSQHSSFLDRMLPSMRHHSTGLGGIAMTAESSSGVVR
DSLEQHRNIKESQDALKALLPNINSSSSSSSSVHHMGAPLGFGPGARSVSGPRSGGPGGM
SHSLSWVGSYGTGTTSWMDPAIITGFPSSAGNSLDSLQDDNPPHWLKSLQVLTEMDAASL
PSSTANPTPQQPNSHSGQVRPHHRPSWAPYPPPSTASHNPHPASQFHSPPPGFQTTFRSP
AQTPTELLLSAGVDRH
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggatcctatggagtgtccgctgtgtttggagtcgctggagatagacgatgccaacttc
ttcccctgcacctgcggctaccagatctgccgcttctgttggcaccgcatccgcacagac
gagaacggcctctgccctgcctgcagaaagccttacccagagttcccagcggtgtacaac
cctctgtcggcggaggagctgcagaggataaagaatgagaagaagtccaaacaggtggag
aagaaacagaagacgacagaaaacaggaagcacctggccagcgtcagggtggtgcagaga
aacctggtgtttctagtgggcctgtcacagagactggccgaccctgagattctgaagaga
ccagagtatttcgtgaagtttgggaaggtccataaggttgtcattaacaacagcacctca
tacgccggctcacagggtcccagtgccagtgcctatgtcacttacatccgctctgaagac
gccctcagagcaatacagtgtgtcaacaacctagtagtagacggcagaacactgaaggct
tctttagggacgacgaaatactgcagctactttctgaagagcatggggtgtcccaaacct
gactgcatgtatctacacgagctgggagatgatgcggccagcttcactaaagaggagatg
caggcagggaagcatcaagagtatgagcagaggctgttacaggatctgtaccagaacccc
agctttaccacccagacctcaggaggggagacaaccaggagctctaaaccctgctcttta
cagagatccaacagtaacaacagccatggacaagacgtgtggccaacgttacaacccacg
gggaaaacaaccaatggtgtatcggatcaccgtaagagccctccgtcgaacggcggcgtc
tcggactctgagcacatgacaccggatggaccagaatgtgccgttggtctgggctctgtg
attggcctctcagccttctcctcaagcggtgacccccccagccccagtgacgctctgcca
gacgtcatcaggagcagtgacacacaacacggagactcctcagaacgtcacaacctgctc
ccagacagtgactctccgtcgccccctcctgtcctctccggccctcctggtttctccaaa
gccagccaggtggttcccatcagtgtgactacccggtctccctttcagggggctgccgcc
gagtcccagtctctgttctcagacaatagtaacttccgccatcctaaccccatccccagc
agcctccatgggttccccagcaccgagacacataacaaccacgacacctggtccactgct
ccccaaccacacagcctcttcacttcagataccatcccagtatcgtcctcaacagactgg
caggcagcgttcggcttcggctcatccaaacaacagacgtcagaagatgacctgggattt
gatcccttcgacatcacccgtaaagccctggaggacctgatagagaaggagctcagcatt
caggacagcctcccgtccctctccatctccccaggtcccttccccccccaccaccactca
ctcctctcctctgtacccaccaaagctggttctggtccccctggagagctgataccccgt
aaccacttcttctctgggctgaactctggtctctctagtaatcactgcttctcccagatg
catcaacaccaccaacaccctcaacaacgggctgtctataactccttcagcttccccgga
cagccgccaccatcatcgtcctcgtcttcatcacagaccagccgtcacccctggatgacg
tcctccacggctgtaggctcggccccgacgcgcaataacttcacgacgcactttggcggc
aaccgtacggtgtcacaacacagcagcttcctggaccggatgctgcccagtatgcgtcac
cacagtacagggctgggaggcatcgccatgacagcagaaagcagcagtggtgttgtcagg
gattcactagaacagcatagaaacattaaagagagccaggacgcccttaaagccctactg
ccaaacatcaactcctcctcctcctcttcgtccagtgttcaccacatgggggcaccgctg
ggcttcgggccgggggccaggtcagtttcgggaccaaggtctggtgggccggggggcatg
tcacatagccttagctgggtcgggagctatgggacgggcacgaccagctggatggatcca
gccatcatcacaggtttcccatcatcagcaggcaacagtttggactccctccaggatgac
aaccctccccactggctcaagtcccttcaggtccttacagagatggatgctgcgtctctc
cccagctccactgctaacccaaccccccagcagcccaactcacacagcggccaggtccgc
cctcaccacagacccagctgggctccctacccacccccatccacagcctctcacaacccc
cacccagccagtcaattccactctccacctccaggcttccagacgactttcagatccccg
gctcagacacccacagagctgctactgagcgccggcgtggaccgccactag
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