Salmo trutta (river trout): 115192132
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Entry
115192132 CDS
T08542
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
KO
K13175
THO complex subunit 6
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
stru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115192132
09122 Translation
03013 Nucleocytoplasmic transport
115192132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115192132
03041 Spliceosome [BR:
stru03041
]
115192132
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115192132
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115192132
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_WDHD1_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_Prp19
Beta-prop_NOL10_N
WD40_CDC20-Fz
WDR55
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_Gbeta
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
TRM82_WD
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_IP5PC_F
Beta-prop_ACSF4
CFAP251_N
DSE1_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_VPS8
WDR54
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
WD40_like
Beta-prop_WDR41
Beta-prop_HPS5
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
115192132
NCBI-ProteinID:
XP_029606156
LinkDB
All DBs
Position
4:complement(25192088..25201950)
Genome browser
AA seq
336 aa
AA seq
DB search
MVMQSTAIKSPAQITTLLHLHMSVFSQSFSPCGRFLAAGNNYGEIAVFSLSSALSPDATD
LSQKPILTFTAHEGPVFSLLSTDSHLLSAGNGEISAWSWAELIKRNTKAAWTKRPNYKSS
LEIPEINAMTINPTENSLVIGGGDNNIHIMDLESGVFKSVLQGHTDYIHCLSVREREGEI
LSGSEDGAVRIWDYRTGQSVHCIEVYKYEECARPQYGKWISCLTTDSDWMLCGGGPSLSL
WHLRSMSPTSIFPLSGCQRQANFYQDMILSVGEGQCVSHCLLGGEVKAQIPCTPHSLNTL
ALNLNSTEHRVLTVGGSSHQMDVFTNLSYRTFSLSF
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgcaatcaacggcaatcaagtcgcctgctcagataactacattgctacacctc
cacatgtccgtgttctcccagagtttctctccctgtggtcgtttcctagccgccggcaac
aactacggcgagatagcggtgttcagtctctcctcagcgcttagcccagatgctacagat
ctgagccagaaacccatcctcacatttactgctcacgaggggcccgtcttctctctcctc
tccacggactctcacctcctgagtgccggcaatggagagatcagcgcctggagctgggcg
gagcttatcaagcggaataccaaggctgcttggacaaagaggccgaattacaaatccagc
ctggagatcccagagatcaatgccatgactatcaatcccactgagaacagtctagtgatt
ggtggaggggacaataacatccacataatggatctggaaagtggcgtctttaagtcagtt
ctgcagggtcatacagactacatccactgtctgagtgtgagagagagggagggggagatc
ctctctgggagtgaggacggcgctgtcaggatatgggactacaggactggccaatccgta
cactgcattgaggtctacaaatatgaggaatgcgcccgcccccaatatggcaagtggatc
agctgcctgacaaccgactctgattggatgctctgtggaggaggcccatccctttcccta
tggcacctccgctccatgtcacccacctccatcttccctctctccggatgccagcgacaa
gccaacttttaccaggacatgatcttgtcggtgggtgagggccagtgtgtgtcccactgt
ctcctcgggggagaggtaaaggctcagatcccctgcaccccccactccctcaacacgctg
gcactgaacctcaacagcactgaacacagggtgctgacagtaggtggaagcagtcaccag
atggacgtattcaccaacctgtcctacagaaccttctcgctgtctttctga
DBGET
integrated database retrieval system
