Salmo trutta (river trout): 115192676
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Entry
115192676 CDS
T08542
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
stru01001
]
115192676
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stru04121
]
115192676
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115192676
Protein kinases [BR:
stru01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
115192676
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115192676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
Bromodomain
ANCHR-like_BBOX
PHD
zf-RING_UBOX
PHD-1st_NSD
zf-RING_5
zf-C3HC4
zf-RING_2
zf-C3HC4_2
DUF7201
Motif
Other DBs
NCBI-GeneID:
115192676
NCBI-ProteinID:
XP_029607294
Ensembl:
ENSSTUG00000008716
LinkDB
All DBs
Position
4:complement(57024271..57037543)
Genome browser
AA seq
1022 aa
AA seq
DB search
MDEGAESDDAVIIVENEAESMPVQENTNACNERTGTLNFLDTCPVCHLNFHSREPKLLPC
LHSFCKKCLPSASRNLAMPDTNSSTKPRELLMFTNYRYARQCIPNGEVHPVNVIRCPVCR
QECMEVDVMENFFVRDSVEASSSTVERTVQLCMSCEDNTETTGFCVDCVEFMCATCVEAH
QRVKFTKDHTIRQKGDVSQESVGVSTHRPVFCEVHKQEPLKLFCETCDLPTCRDCQLLKH
KDHNYQFLEDAYKNHKHYMEDMNRQLQEKKKIIEDVSNSINNGLLQVDENRISVHNEIKK
SICSLILEINRKGKILVNQLEGLTKDHESGLKKQKEDIGYLSRHLDHVINFTKWATARNG
GTALLYCKRLILFQIGNLLRAKCNTSFVPQSTVRFQCRSGFWASNVDLGSLVVENVPGPQ
LGGFQGIPHQLPHPGQGPSGSPNSLPPGLSQPRLAPHNHNTLAQLQMQVEKLAQQPHWQP
QTPPWAWYQSMRLQRPPPGPLQGGSPSQSLPPMPQQGRRFIAPPAIHLSPTSTLPSPGYP
PQAVQSLRGLVSSPSSYALKHMDVFNPMPHFSHNAPLPSNGSLSSPHLRQQQMESAYHNK
HPGGPVQIIRPNFPQTLPASLPYRTAQGHHHAGLTAISCEEKPGTVSWKPLETQQKAYGA
GGSAAKRRRRSSPGPIIIIKDEPEDDISCVQGNLRANLPDSSTGVQAQTCRQDGGEQQVQ
ISRQSTEEKAQTPPQPPGPSGDLSQAPQQSHSLGAEQQLGSQGPAPEEDPNEDWCAVCQN
GGELLLCCDKCPKVFHLSCHIPTLFRLPSGEWFCSFCRDLSVPEVVYDCDISRLEPRTVK
EEPDSEGGFCPVDKRKCERLLLKMYCSELSADFQEARSPLIMPENQESPKTPMVLSIVKS
KLESRQSPCYQTPSEFVSDIRLIFRNCAAFNEADTEVATAGRNLERFFEEQLKFLYPERM
FPKVKSEVISPVTPPVSPPPPTTTDEESSQHAKHQRRCSETQELCTPIPAQLSSPKGEEE
AV
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggtgcagagtccgatgatgctgtcattattgtggagaacgaagcagagagc
atgccagttcaggagaacacgaacgcctgcaacgagcggacaggcaccttgaattttctg
gacacttgtcccgtgtgtcatttaaactttcacagtcgagaaccaaaacttctgccatgt
ctccactcattttgtaagaagtgtttgccgtcggcttccaggaatttggccatgccagac
actaacagctcgacgaaaccacgtgagctgctcatgtttacaaactatagatacgcgaga
cagtgcatcccaaatggggaggtgcatccggtgaatgtgattcgctgtccggtgtgcaga
caggagtgtatggaggtggacgtgatggagaacttctttgtgagggactcagtggaggct
tccagcagcactgtggagaggactgttcagctgtgtatgagttgtgaggataacacagag
actacaggtttttgtgtggactgtgtggagttcatgtgtgccacctgcgtggaggcgcac
cagagggtcaagttcaccaaagaccacaccatcagacagaagggggatgtatctcaagag
tctgtgggtgtttccactcataggccagtgttctgtgaagtccacaagcaggagcccctg
aagctgttctgtgaaacctgtgatctaccaacctgtcgagactgtcagctactcaagcac
aaggaccacaattaccagtttctggaggatgcctataagaatcacaaacattacatggag
gatatgaatcgtcaactgcaggaaaaaaagaagataattgaagatgtgtcaaactccata
aacaatggactccttcaagttgatgagaaccgcatatcagttcacaatgaaatcaagaag
tcgatctgtagtctgatactagagatcaacagaaagggaaagattcttgtcaatcaactt
gagggcctgacaaaggatcatgagagcggtctgaagaagcagaaggaggatattggctat
ctgtccagacacctggatcacgtgatcaacttcacaaaatgggcgacagctaggaacggc
ggcacagctctcctgtactgcaaacgtttgattctgtttcagatcggaaacctcctgcgg
gctaaatgcaatacctcgtttgtaccgcagagcactgtgcgtttccagtgtcggtctggc
ttctgggcttcaaatgtcgatctgggctcattagtggtggagaatgtcccaggcccccag
ctgggcggcttccagggcatccctcatcaactcccccatcctgggcagggcccctcaggc
tcccccaacagcctgcccccaggcctctcccagccccgcctggccccccacaaccacaac
accctggctcagctccagatgcaggtggagaaactagcccaacagcctcactggcagccc
cagaccccaccctgggcctggtaccagagcatgcggctccagagaccacctccagggccc
ctccagggtggctctccctcccagagtctcccccctatgccccagcagggccggaggttc
attgccccccctgcaatccatctcagtcccaccagcaccctgccaagtcctggatatcct
ccccaggctgtccaatcactgagaggcctggtgagcagccccagcagctatgcactcaaa
cacatggacgtattcaacccaatgcctcacttctcccacaatgcaccactgcctagcaac
ggcagcctcagttctcctcacttgcgacagcaacagatggagtctgcatatcacaacaag
caccctggaggccctgtccagataataagacccaacttccctcagaccctaccagcttcc
ctcccatacagaactgcacaaggacaccatcatgcaggactaactgctatatcctgtgaa
gagaaaccagggactgtttcctggaaacctctggagacgcagcagaaggcgtatggagct
gggggatcagctgccaagaggagacgaaggtcatcgcctggacccatcatcatcatcaaa
gacgagccagaggacgacatcagctgtgtacagggtaacctgagagccaacctcccagac
agtagcacgggggtccaggcccaaacctgtcggcaagatggaggggaacaacaagtccag
atatctcgtcagagcacagaggaaaaggcccagaccccaccacagcctccagggccttca
ggggacctgagtcaagccccacagcagagccactctctgggggcagagcagcagctaggc
agtcagggcccagctccagaagaggaccctaatgaggattggtgtgctgtgtgtcagaat
ggaggagagctgctgctgtgttgtgacaagtgtcccaaagtcttccacctctcctgccac
atccccaccctcttcagattacccagtggggagtggttctgctcattctgccgtgacctg
tcagtgcctgaggtggtgtatgactgtgacatcagcagattagagcccagaacagtgaag
gaggaaccagactctgagggaggattctgccctgtggacaaacggaaatgtgagagactg
ttgctgaagatgtactgcagtgagctcagtgctgacttccaggaggctagatctcccttg
ataatgccagagaaccaggagagcccaaagacgccgatggttctgtccattgtgaagagc
aagctggaatccaggcagagcccctgctaccagacaccttctgagtttgtatcagacatc
cgactcatcttcaggaactgtgcagcattcaatgaggctgacactgaggttgccactgca
gggagaaacctggagaggttctttgaggagcagctgaagttcctctaccctgaacgaatg
tttccaaaggtcaagtctgaggtcatcagtcctgtgacccctcccgtctctcctccccct
cccacaaccactgatgaggagagctcccagcatgcaaagcatcagcgcaggtgctctgag
acccaggagttgtgtactcctattcctgctcagctaagctcaccaaagggagaggaagag
gccgtataa
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