Salmo trutta (river trout): 115192920
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Entry
115192920 CDS
T08542
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03022
Basal transcription factors
stru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115192920 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
115192920 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stru03021
]
115192920 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
stru03400
]
115192920 (gtf2h1)
Transcription machinery [BR:
stru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115192920 (gtf2h1)
DNA repair and recombination proteins [BR:
stru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115192920 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
115192920
NCBI-ProteinID:
XP_029607733
Ensembl:
ENSSTUG00000020859
UniProt:
A0A673ZS28
LinkDB
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Position
4:66866913..66883187
Genome browser
AA seq
550 aa
AA seq
DB search
MAALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTNLHFSNESTALKDRDAVKDLLQQLLPKFKKRANKELEEKNRMLQE
DPVLFQLYKDLVVCQVISAEEFWANRLSINNVDHSLSNNKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKQKYGENVPHNMTEKEFWTRFFQSHYFHRDRINTGLQD
IFSECAKQDEKGLKSMVFQGVKNPMVDLLSLEDKSLDEGYGSNSTAPSTSNSNKTVKENS
NSAIIKRFNHHSTMVLAAGSGKKADAPNGQACETSSTDGNSRDSDFFQPPIKKVKIQDVI
EYEDLHRENGMKTVALNLKKSDRYSHGPVPLLPQQYTTSQDIVNSVNCIKHEIASYKPCL
TQVMSSSTASSAIAALSPGGVLMQALAQQAINQMVPNDVQEELKHLYTAAGELLRHFWSC
FPVNTPFLEEKVVKMRSNLERFQMTKLRPFQEKVQRQYLSTNLTGHLEDMLQMAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttgtcggaggaggtgctgctggtggtgaagagggtccgacagaggaagcag
gatgggaccctatacctgatggcagagcggatagcctggggaccagaggggaaagaccgt
ttcaccgtcagccacctgtatgctgacatacgctgtcagaagatcagcccagatggcaag
gccaagattcagctgcagttggtcctacacacaggggagagcaccaacctccacttttcc
aatgagagcactgccctgaaagaccgcgatgcagtcaaggacctcctccagcagctgttg
cccaagttcaagaagagggctaacaaggaattggaagagaagaacagaatgttacaggaa
gatccggtgctgttccagttgtacaaggatctggtggtctgtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcataaacaacgtggatcactccctctccaacaacaag
caggaagttggcatctcggcagccttcctggcggacatccggccccagacagatggctgt
aacggccttagatacaaccttacctctgacattatcgagtcaatcttcagaacgtaccct
gcagtgaaacagaagtatggtgagaacgttcctcataacatgacagagaaggagttctgg
acgcggttcttccagtcccactacttccaccgagaccgcatcaacacgggccttcaggac
atcttctccgagtgtgcaaagcaggacgagaagggcctgaagtccatggtgttccaagga
gtgaagaacccaatggtggacctactgtcactggaggacaagtcgttagatgagggttat
gggtctaactccacagcaccgtctacgtccaacagtaacaagaccgtgaaggagaacagt
aactctgccataatcaagaggttcaaccaccacagtaccatggtgctggcagcaggctcc
ggaaagaaagcggatgctcctaacggtcaggcctgtgagactagcagtacagatggaaac
tctagggattcagacttcttccaaccacccattaagaaggtgaaaatacaagatgtcata
gagtatgaggaccttcatagggagaatgggatgaagacagttgctctgaacctcaagaag
tctgacaggtactctcatggtcccgtgcctctcctgccccaacagtacaccaccagtcaa
gacatcgtcaactctgtcaactgtataaagcatgaaatagcaagctacaagccctgcctt
actcaggtgatgtccagcagtacagccagttctgccatcgctgccctctccccagggggt
gttctcatgcaggcattagcacagcaagccattaaccagatggtacccaacgacgttcag
gaagagctgaagcatctgtacacggctgctggggagctgctgagacacttctggtcctgt
tttcctgtcaacacacctttcctggaagagaaggtggtaaagatgaggtccaacctggag
agattccagatgaccaagctccgccccttccaggagaaagtccagcgtcaatacctgagt
actaaccttactggtcaccttgaggacatgcttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgatgaggaaaacctga
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