Salmo trutta (river trout): 115193736
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Entry
115193736 CDS
T08542
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115193736 (col17a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
115193736
NCBI-ProteinID:
XP_029608551
Ensembl:
ENSSTUG00000018724
UniProt:
A0A673ZDT9
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Position
5:complement(16263496..16286944)
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AA seq
1651 aa
AA seq
DB search
MDDLTTRKRNHSGGSSGGKVVTETTTSTSRLVSLPPKGGSGSKSSTHRTMSSNAGGLWLE
KNILTQNSSGTNFSSSSVGVNAGGSSSSSGFYMGDYSEGGGDGGGGGGGGGGGGGGGGGV
GSGGGGGSGYGGVYGGSPGSKVKSSSSGGSRRAQSSTSPGGLSPGFLERKSMASRSGGYD
GSSSGNSSPEFTRKDYAGSGATRIGRSQSRESEIRARLQSASPSAGRWTELDDVKRLVKG
GRSNSVSPTRSSTSSTLPVPRKATVEAKIITQASQSVSGQYETTTLDSGLPSSYSWTSST
LPISSATGNSSSAYGYHSNTNNMSPGLGSSLLNTTSPSSLSVYGFQNNLAPMSSSVLTTS
GVNAHSGTLTGYGVQKNISNGGGLVSTGVSTSAMSALRSHTDDAYRKDLKYLVLQKENVP
VKRDTEVLTLTKDSGKHFTSSVRSVGGSLSGDSLKKEKMVSSYSETAPVLLKSDSNSYYG
SPLVSTKDKATYAEIQKEGDYYSSGGRGGGCCGCEDSCCSWWKWLLGLLLLSLLLLGLLF
GLIALAEDVRNLKSRVAALESTSTAAHTSRLSASNNDIHNLQSGTYMDPGGAARSDNTLN
LDTSLGMGMGTGTGTGIAGHTDNAALQRTIQQLLRAEMQSQSFRALLPSSMKGDRGEAGT
KGDAGNHGTKGDNGFPGLPGLPGAIGHPGHEGPKGQKGSQGDHGAEGPQGLRGREGPGGP
RGEPGPSGFGEKGDKGSPGESGSLGPAGPVGPAGPKGSGGVPGTPGTPGQPGSQGFRGES
GLPGPKGERGPAGFQGIKGDHGEKGPRGASGDPGLSGLPGPAGEKGPKGSAGTPGIDGDK
GQRGDHGPTGLPGIRGPSGPAGDSALPGTPGLQGPPGIPGNPGQPGAKGEAGEPGRIINA
GGSSSVAIPGPPGSPGPPGQAGPPGLSGPIGPAGLPGQSGPKGERGLKGEMGIQGLQGLQ
GEAGISVKTSETVSSSRAERQFSAAAQPGPPGPPGPPGAPGRAGDSRPGLPGPAGPPGEP
GYGRPGPRGEKGESGSFVPNSGTFFSGPPGPPGPSGPKGSPGTPGPRGYQGDSGQPGLPG
SPGRPGGGSERASSYGGTQGPPGPPGTPGNPGPEGRKGEPGIPGSPGLPGSARGTVAASP
GFPGPPGPPGPPGHPGIPGIASAPPDLRQYVNDYLQINARSMSSGLPGPRGLPGPPGAPG
SSGSSSSVEDISSRVIAYLQRSGSGFGGGAQGPPGPPGPPGSSGSSSGSMSVNDLIVMLQ
RDDVRRYVMGPPGPPGPAGPAARGGSTANYDPQEVATYVFRIMNERGIGGGQPGPPGATG
PPGLPGSSNGVTDISALLQNSQFRAMVGRSAGAPGLPGTPGIPGPPGPPGTPGGSSYRSS
ASGGLRIEDVQHYLQSSGYSGPPGPPGPPGPQGPPGNSHGVVSYGDSRNIGNYQRESIRT
ELQAYLSSDSIRHSFIGPPGPPGSQGPRGHKGDPGEPGGVQTNRQSYAQSDPRYSSDLER
RQSDIGRLTEPLDYSNVALRVTDYIKNQGLLQDFLSESHQRGGSWETQGLPGPPGPPGPP
GYSRVIGAYGNVTADLMDFFRTHGTIVGPPGNTGPKGDRGYLGPKGDRGEMGRPGPPGLQ
GLHGQDGYKGEKGEKGAGEVRVGRRRRSIGV
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaacaacaagaaagagaaaccactcaggaggaagctccgggggaaaggtt
gtgacagaaactacaacctcgacaagtagattggtatctttacctccaaagggtggcagt
ggatcaaaaagtagtacgcacaggactatgtccagcaatgctggaggcctgtggttggaa
aagaacattttaacccagaacagcagtggaactaacttttcctcatcttctgtgggtgtc
aatgccggaggatccagctcctcatcagggttctacatgggggactactctgagggtggt
ggagatggtggagggggaggtggtggaggtgggggaggtggaggaggcggtggaggtgtt
ggcagtggaggtgggggtggctcaggctatggaggagtgtatggaggaagccctgggtca
aaggtaaagagcagctcgtcagggggctccaggagggcccagagctctacctcgcctggg
ggtctctcccctggcttcctggaaaggaagagtatggccagtcgctcaggaggctacgac
ggaagctcaagtggcaactcctcccccgagtttacacggaaagactatgcagggtcaggt
gccactagaatagggaggagccagagcagagagagtgaaatcagagctagactgcagagt
gcctctcccagtgctggcagatggactgagctggatgatgtgaagaggctggtgaaggga
ggacgctccaacagtgtcagccccacccgctcctctacctcctccaccctgcctgtcccc
aggaaggccaccgtcgaggccaagatcatcactcaggcctcccagtcagtctctgggcag
tatgagaccactaccctggactctggcctaccttcttcctactcctggactagctccacg
ctgcccatctcctctgccactggcaacagcagcagcgcgtatggttaccatagcaacaca
aacaacatgtctccaggcttggggtcctccctgctcaacaccacctcaccctcctccttg
tcagtgtatggattccagaataacttggcgcccatgtccagtagtgtcctcaccaccagt
ggagttaacgcacattcaggcactttgacaggatatggagtgcagaagaacatatcgaat
ggtggtggtctcgtcagcacaggagtgtcaacctctgcaatgtccgctttgaggtctcac
actgatgacgcatacaggaaagacttaaagtaccttgtgctgcagaaggagaatgttcca
gtcaagagagatactgaggtgctcaccctgactaaagacagtggaaaacacttcactagc
agtgttcgcagtgttgggggttcactgtctggtgattctctaaagaaggagaagatggtg
tccagctatagtgagactgcaccagtccttctgaagtctgattccaattcatactatgga
tcacccctagtgtcaacaaaagacaaagcaacatatgcagagatccaaaaagagggggac
tactacagcagcggaggacgaggtgggggctgttgtgggtgtgaggactcctgctgttcc
tggtggaagtggctgctaggactgctcctgctctccctgctgctcctgggcctgctcttc
ggactcattgccctggcggaggacgtgagaaatctgaagtctcgagtggcagctctggag
tccacttccaccgctgctcacaccagccgcctgtcagcctccaataacgacatccacaac
ctccagtctggcacctacatggaccctgggggcgcggcccgctccgacaacaccctgaac
ctggataccagcctgggcatggggatgggcactggcacgggcactggcatcgccgggcac
acggacaatgctgccctccagaggactatccagcaactactgagagctgagatgcagtct
cagtcattcagagcccttcttccctcttcaatgaaaggggacagaggagaggcgggaact
aaaggcgatgcagggaatcatggaactaaaggtgacaatggtttcccaggactgccaggt
cttccaggtgccattggtcatccaggacacgaaggacccaaaggacaaaaaggaagtcaa
ggtgaccatggagctgaggggccacaagggctcaggggccgagaggggcctggagggccc
agaggggagccaggaccctcagggtttggagagaagggggataaaggttctcctggtgaa
tcaggatctcttggtcctgctggtccagtcggcccggctgggcccaaaggctcggggggt
gttccggggactcctggtacccctggccaaccaggatctcaaggcttccgtggagaatca
ggactacctggcccgaagggggagaggggtcctgctggatttcagggaatcaaaggtgac
catggtgagaaaggacctcgtggtgcctcaggtgacccaggactatcaggcttgccagga
ccagccggagagaaaggacccaaaggatctgcaggaactcctggaattgatggcgacaaa
ggccaaagaggtgatcacggtcctactgggttaccagggatcagaggtccatctgggcct
gcaggggactcagccctaccaggaacccctgggcttcaagggccaccaggaataccaggg
aaccctggacaaccaggagccaagggtgaggcaggagaaccaggaagaatcatcaatgca
gggggatccagttctgtggccatccccggccccccaggaagccccggaccacccggtcaa
gccggacccccagggttatcaggccccattggccctgctggtcttcctggccagtctggt
cctaaaggtgagagagggctgaagggtgagatgggtattcagggactccagggactccag
ggagaggcaggtatctcggtgaaaaccagtgaaaccgtcagctcatccagagctgagaga
cagttcagtgctgctgcacaaccaggtccccctggtccccctggaccccctggagcccct
ggacgtgcaggtgactcaagaccaggactcccaggaccagctggtcccccaggagagcca
ggatatggcagacctggtcctagaggagagaaaggagagtcaggaagctttgtacccaat
tcaggaacattcttctctggaccccctggacctcccgggccatctgggccaaaaggatca
cctggtacaccaggaccaagaggataccaaggagattcaggccagcctggtctaccaggg
agcccaggaagaccaggaggaggctctgaaagagcatcatcatacggtggaacacagggg
ccacctgggcccccagggactccagggaatcctggaccagagggacggaaaggcgaacct
ggaattcccggttctcctggtcttcctggctctgcaagaggcactgtggcggccagccca
gggttcccaggtcctcctggtccaccgggtcctcccggacacccaggcattccaggcata
gcctccgctcctcctgatctgcgtcagtatgtcaacgactatctccaaattaatgctagg
agtatgtcctctggtcttcctggcccccgtggcctccctggacccccaggagcccctgga
tcctctggatcctctagttctgtagaggacatatcttctcgtgtcatcgcttatctgcag
cgttcaggatcaggctttggcggtggtgctcagggtcctccaggccccccaggacctcct
gggtcctctggctctagttctggctcaatgtctgtcaacgacctcattgtcatgctacag
agggatgatgtacggcgatacgtaatgggcccacccggacctccaggcccagcaggacca
gcagccagaggaggcagtacggcaaactacgacccacaggaagtggctacctacgtcttc
agaatcatgaacgagcgcgggatcggtggtgggcagcctggacctccgggtgcaaccggg
cctccagggctacctggctcctccaacggtgttactgacatctccgcactcctgcaaaat
tcacaattccgtgcgatggttgggcgctctgctggagcccctggtcttcctggtactcca
ggtatcccgggacccccaggcccccctggtaccccaggagggtcatcttacaggagctca
gcctcagggggtttaaggatagaggacgtccagcattacctccaaagttctgggtacagt
ggtcctccaggcccacccggccccccaggacctcaggggcccccagggaactctcacgga
gtagtctcctatggagatagtagaaacatcggaaattaccagcgagaaagcatccgcaca
gaactccaggcatacctcagcagtgacagtatacggcactccttcattggcccaccaggt
cctcctgggtctcagggtccccgtggtcacaaaggagaccctggagaacctggtggggtt
cagactaaccgtcagagttatgcccagagtgacccacgttactcttctgaccttgagcgg
cgccagagtgacattgggaggttgacagagccactagactactccaacgttgccttgaga
gtgacagactacatcaagaaccagggcttactgcaggacttcctgtctgagagtcaccag
cgaggaggctcctgggagacccaaggcctcccaggaccccctgggcctcctggacctccc
gggtatagccgtgtcattggggcttacggcaacgtgactgctgacctcatggacttcttt
agaacccacggcaccattgttggccccccagggaatactggaccgaaaggagacaggggg
tacctcggacccaaaggagacagaggcgagatgggtcgcccaggccctccaggactgcag
gggctacatggtcaggatggatacaaaggagagaagggagagaaaggtgcaggtgaagtt
agggttggtcgtcggcgtcggagcatcggtgtttaa
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integrated database retrieval system
