Salmo trutta (river trout): 115193801
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Entry
115193801 CDS
T08542
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
stru03041
]
115193801
Enzymes [BR:
stru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115193801
Spliceosome [BR:
stru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115193801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
KH_PNO1_2nd
ResIII
KH_2
SNF2-rel_dom
KH-I_KHDC4-BBP
CMS1
Motif
Other DBs
NCBI-GeneID:
115193801
NCBI-ProteinID:
XP_029608661
LinkDB
All DBs
Position
5:complement(19307735..19337697)
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AA seq
702 aa
AA seq
DB search
MSDWEEENDVPTPAITAPPTDWKSSWKGSAKENVCFGVENAGGFRAPRGRGDPNGSHCQN
WRDSYGGNDRVFSRSGDGYACRGGRRGRGADGSASTPPVTFTVENTSIGRVIGRGGAKIR
ELEETSGARIKISKGDYEGEVQIFGSSKVQQKAREMIEELVAGDNGPGGFRREPGCDGGF
GVRGGRFRGAGGGGRSGSIWSAAALQASLEDNPPQAIDWVSMRANRHKYEEMKWQDLPPL
KKDFYFESEIVASRCEEEVKAWRKANNDIFVDDLKEGEGEKRPFPNPVVTFDEAFLHYPG
IMENIVRVGFAKPTPIQSQAWPMSLKGDDLIAIAQTGTGKTLAYLLPGFIHMDGQPVKRD
KQDGPGMLVLTPTRELALQIESECNKYSYKGFKCVCVYGGGDRRAQIKAISAGVDIVIAT
PGRFNDLQMNELINLHSITYLVLDEADRMLDMGFEPQIMKILLDVRPDRQTMMTSATWPT
GVRRLAKTYLNNPMMVYVGTLDLAAVNTVQQTVLFCQDEEKKAYLFNFVHNMEPEDKVLI
FVGKKIMCDDLSSDMCLRGLAVQSLHGDREQCDREEALKDFKESVVRILVATDLASRGLD
VTDVTHVFNFDFPRNIEEYVHRVGRTGRAGRSGASITLVTRGDWRKAADLIPILERAGQE
VPDELVLMAERYEKHKREKEMYGSRGGGGRGVRDRGESNWRF
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactgggaggaggaaaacgatgtacctacgcctgctatcacagcaccacccaca
gattggaagtcttcgtggaaagggagtgcgaaggaaaatgtgtgctttggggtggaaaat
gcaggtggtttcagagcgccaagagggagaggggatcccaacggatctcattgtcaaaat
tggagggacagctatggaggcaacgaccgcgtgttctccagaagtggggacggttatgcc
tgtagaggtgggcgcagaggccgtggcgcagacgggtctgcttcaactccgcccgtcact
ttcacggtggaaaatacctcaattggaagggttataggtcgcggaggagctaaaatacgt
gaacttgaagaaacaagtggtgcacgaatcaagatcagcaagggggactatgagggtgag
gtgcaaatcttcgggagcagcaaggttcagcagaaggcccgagagatgatcgaggagttg
gtagccggagacaatggccctgggggatttcgcagagaacctgggtgtgatggaggattt
ggggttagaggtggaagatttaggggtgctggtggcggaggccggagcggctccatctgg
tcagctgcagccctgcaggcgtctctggaggacaatcctccacaggccatcgactgggtc
tccatgagggcgaaccggcacaaatacgaggagatgaagtggcaggatctcccacctctg
aagaaggatttctactttgagtcagagattgtagccagtcggtgtgaagaggaagtaaag
gcatggaggaaagcgaataacgatatctttgtggatgacctgaaggagggagaaggggag
aaacgtccctttcccaaccctgtggtcacgttcgacgaagccttcctgcactatcctggg
atcatggagaatattgtcagagtcggcttcgccaagccaactcctatccagtctcaagcc
tggcccatgtcgctgaaaggagatgacctgattgcgatcgcccagacaggcacagggaag
acactggcctacctcctacctggcttcattcacatggatggccagcctgtaaaacgtgat
aagcaggacggccctggtatgcttgttctgactcccactagagagctggctctgcagatt
gagtcagagtgcaacaagtacagctacaagggcttcaaatgtgtgtgtgtctacggaggt
ggagaccgcagggcccagattaaagcgatctcagctggagtagacattgtgatcgctacg
cctggccggtttaacgacctgcagatgaacgagctgatcaacctgcattccatcacctac
ctggtgctggatgaggcagacaggatgcttgacatgggctttgagcctcaaatcatgaag
attcttctggacgtccgtccggacagacagactatgatgaccagtgccacctggcccacg
ggagtgaggcgattggccaagacgtacctgaataaccccatgatggtctatgtgggaact
ctggacctggctgctgtgaacacagtgcagcagactgttctcttttgtcaagacgaggag
aagaaggcctatctctttaacttcgtccacaacatggagcctgaggacaaagtgctcatc
ttcgtaggcaagaagataatgtgtgacgacctgtccagtgacatgtgtctgcggggcctg
gcagtacagagtcttcatggggaccgggaacagtgtgaccgcgaggaggcgctcaaggac
ttcaaagaaagtgttgtccgtatcctagtggccactgacctggcctcccgagggctggac
gtgacagacgtcacacacgtcttcaactttgacttcccacgcaacattgaagagtatgtg
catcgcgtgggccgcacgggccgggcaggacgctctggggcctctatcaccttggtaacg
agaggagactggaggaaggctgctgacctgatccccatcctggagagggctggacaggag
gtacctgatgagctggtgctcatggcagagagatatgagaagcacaagcgagagaaggag
atgtacggctccagaggaggagggggaagaggcgtaagagacagaggagagtctaactgg
aggttctaa
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