Salmo trutta (river trout): 115193807
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Entry
115193807 CDS
T08542
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
stru
Salmo trutta (river trout)
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
stru04121
]
115193807
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
115193807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
115193807
NCBI-ProteinID:
XP_029608696
Ensembl:
ENSSTUG00000030759
LinkDB
All DBs
Position
5:complement(19770795..19812948)
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AA seq
1979 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMLKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPHRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDPPEPGGGRSGSSEGGGGDYKGRSP
QQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVCLSLEEGSSKGMYKGAGSSSSTGGK
AKIAQGGKSSSGGSGVVGGKHQAAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASNTF
DFTPPPPEMLPSPSPLLREPHKYSGGGKVAGNTPKERAFEGKRVTLAATLPAAEPQPAFP
TKENAAVIVEAAIAVVNVEAEMNGNEEAAIAGDVRPSTSVVTVTAAAAKSPRDGRRETGT
GAVALPNQAPEAAAEAGAGGDPVGEDDYQAYFLNSANEEGVERVSENNNEEEPDIFAGIK
PLEQEGQMEVLFACAEALHAHGYSNDACRLAVELAGDLLVNPPDLKVEQPQTKGKKSKVS
TSRQTQVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLAYQE
SEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVCTVVS
PTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALM
ITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAANSQRSPSKHAAHTAHGHGGA
TGGVSKHASNATAAAGPSSSLQAVAAGGVAGQQAGLAGSGVQNNSTAGECVSEAREQADG
VQPASCDQPSEAAPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSSAPE
TTSDSSPTLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKST
DTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQG
PHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDG
HLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQVHVRY
SSVLQKTHRTTHDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGSGAQ
REGPGRCGANGGAGRRPPETGHGVMDNIGNMDSSGVATVTASVTAAAVVPVISVGSTIYQ
SHALPGSAMAHPHTQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGGAYPQCV
CVPSQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGVPVPSMTQIAVHPYHTETGLPLS
TTVAGAASFSPFYPVGGVHSGATIQAIQGSSLPGMSSQPVSLVSAPFPSEDEQHSQPISQ
QGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQF
CVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIH
LTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgttcgccgagtgggaagacggagagaggttctccttcgaagattctgac
cggttcgaggaggactcgctctgctccttcatatcagaggctgagagtctgtgtcagaac
tggaggggatggagaaaacagtctgctggaccaaattctcctacagtgaagattaaagat
ggtcaggtcatccctctggtggagctatcagccaagcaggtggcattccacatcccgttt
gaggtggtggagaaggtctaccctcctgtccccgagcagctgcagctccgcattgcctac
tggagcttcccagagaacgaggaggacatccggctgtactcgtgtctggctaacggcagc
cctgatgagttccagcgaggggagcagctgtacaggatgagggctgtaaaagaccctctg
cagataggtttccacctcagtgccaccgtggtgtcgccccaggctggccaatcaaaaggg
gcgtacaatgtggctgtcatgttcgaccgctgccgcatcacttcctgcagttgcacctgt
ggagccggggccaagtggtgcgcccatgtggtggccctctgcctcttcaggatccacaac
gcgtctgcagtgtgcttgcgagcccccgtgtcagagtccctgtcccggctgcagagggac
cagctgcagaagtttgcccagtacctcatcagtgagcttccccaacagattttgcccaca
gcccagaggctcctggatgagctcctgtcctcccagtccacagccatcaacacagtgtgt
ggggctcccgaccccactgctggcccctcagcctctgatcagagcacctggtatctagat
gagtctacgctcagtgacaacatcaagaagactctgcacaagttctgtggcccctctcct
gttgtcttcagtgacgtcaactccatgtacctgtcatccacggagcctccggcggcggca
gagtgggcgtgtctgctgaggccgctgagggggcgggagcccgaggggatctggaacctc
ctgtccatcgtcagggagatgctcaagaggagagacagcaacgctgcacccctactagag
atcctcactgagcagtgtctcacttatgaacagatcattggctggtggtacagcgtgcgt
acgtcggcatcccacagcagtgccagcgggcacacggggcgcagtaacgggcagtcggag
gtggccgcccacgcctgcgccagcatgtgtgatgagatggtcgttctgtggaggctggct
gtcttagaccccaccatgagccctcataggcgtttggagctggctgcccagctcaagcag
tggcatctgaaagtgattgagatcgtgaagcgaggacaacaccgcaagtccctggacaaa
ctgttccagggcttcaagccagccgtggagtcctgctacttcaactgggaggtggcctac
ccactgccaggcatcacctactgcagtgcagacaagaagagcgcttccttctgctgggcc
agggcagtgcagcagcagagaggggccaaggctggcctggctggagacccccctgaacct
ggaggagggagatctggcagctctgagggaggtgggggagactacaagggcagaagtccc
caacaagaagtggcggtcaggcccaaagagaccatcgtgagcaagaggaaggggttgtcg
gccgggggcggaggaggggtcctagttcggctagggggcagtgtgtgtctctctctagag
gagggcagtagtaaggggatgtacaaaggcgcaggttcctcctcgtccactgggggcaag
gctaagatagcacaggggggcaagtcgtcctctgggggatcaggagtggtagggggaaaa
caccaagcagccaagcggcgcaccagcagtgaggacagctccctcgagcctgacatggcc
gagctgagcctggatgatggctccagtctggcgctgggcgctgaggccagcaacaccttt
gacttcacgcccccgccgcccgagatgctgccctcaccaagcccgctactcagagagcca
cacaaatacagtgggggagggaaagtggccggaaacacgcccaaggagcgcgccttcgag
ggcaaacgggtcacccttgctgccaccctacctgccgctgagccccagcccgccttcccc
accaaagagaacgctgctgtcatcgtggaagcagccattgccgtggtgaatgtggaggcg
gagatgaatggaaatgaggaggcggccatcgctggagacgttcggccctccacctcggtt
gttaccgtgactgcagctgccgccaagtcaccgcgtgatggccgccgagaaactggcact
ggagccgtagccctgcccaatcaggccccagaggcagcagcagaagcaggggcaggagga
gaccctgtaggagaggatgactaccaggcctactttctgaattcagctaatgaggagggt
gtagagagagtgtcggagaacaacaatgaggaggaaccagacatctttgctgggatcaag
ccactggagcaggagggccagatggaggtgctgtttgcatgtgcagaggccctccacgct
cacggctacagcaacgatgcctgcagactggcagtggagctggctggagacctgctggtc
aaccctccagacctgaaggtggagcagccccagaccaagggcaagaagagcaaggtgtcc
accagcaggcagacccaggtggccacaaacaccctggttaagacctcttttctgctgacg
gtgctgagcgagaggctggagcttcacaacctggccttcagcacgggtatgttctctttg
gagctgcagaggcccccagcctccaccaaggccctggaggtcaagcttgcctaccaggag
tcagaggtggtggctctgctgaagaaaatccctctgggcctggtggagatgacgtccata
cgggacagggccgagcagctccgagacgggaacttctgtgactacaggcccgtcctgccc
ctcatgctggccagcttcatatttgatgtgctgtgtaccccagtttgtacagttgtgtcc
cccacaggttcccgtccgcctagccgtaaccggaacaacgagatgcctggagacgaggag
ctgggctttgaggcggctgtagcagcactgggtatgaagaccacagtgagcgaggcagag
catcctctgctgtgtgaggggaccaggagagagaaaggagatttggctctggccctcatg
atcacatacaaggatgaccagagcaagctgaaaaagatcctggacaagctgctggacaga
gagagccagacccacaagccccagaccctgagctccttctactccagcaagccagctgcc
aacagccaaaggagcccgtccaagcacgctgcccacactgctcacggacacggaggtgcc
accggaggggtgtccaaacatgcctccaacgccacagctgcagccgggccctcctcctcc
ttgcaagcggtggctgctgggggggtggcaggacagcaggcgggtctggcgggcagtgga
gtgcagaacaactccacagccggagagtgtgtcagtgaggccagagagcaagcagacggc
gtccagcctgcgtcatgtgaccagccgagcgaggctgccccattcaagccagagggcaca
gtgcccagccgcttggcgctgggaggacggggggcatacagcgggcgctgctggggctct
cctgtccgccagaagaagaaacacactggcatggcgagtatcgacagcagtgctcctgag
accacctcagacagctcccccacccttagtcgacgcccactcagagggggctgggccgca
gcctcctgggggaggggccaagacagtgacagcatcagcagctcctcttctgattcgcta
ggctcctcctcatccagtggctctcgcagggccggaggcggagctagggcaaagagcaca
gacaccagcaggtataaagggcgtcgtcccgagtgccatgcaccccatgtgcccaaccaa
ccgtcagaggcggcggcccacttctacttcgagttggccaagacggtgctgatcaaagcc
gggggcaacagctccacctccatcttcacccagccctcagccagtggaggccaccagggg
ccccaccgcaacttgcacctctgtgcctttgagatcggcctgtatgccctcggcctgcac
aactttgtctcacctaactggctctccaggacctactcctcccacgtctcctggatcaca
ggccaggccatggagatcggcagtgctgccctcaacatcctggtggaatgctgggacggg
cacctcacccctcccgaggtggcatcactggccgacagagcatcacgggcgcgggacccc
aacatggttcgcgctgcggctgagctggccctaagctgcctgccccatgcacacgccctc
aaccccaatgagatccagagggccctggtgcagtgcaaggaacaggtacatgtccggtac
tcttcagttctgcagaagacacatcggactactcatgacaacgtgatgctagagaaagcc
tgtatggctgtagaggaggcagccaaggggggcggtgtgtaccctgaggttctgtttgag
gtggcccaccagtggtactggctctatgagcagacagtaggagggggctcaggggcccag
cgtgaaggccctggacgctgtggggccaacggtggagctgggaggaggcccccagagacg
ggccatggtgtaatggacaacattggcaacatggattcctccggcgtcgccacggtgacg
gcctctgtgacagcagcggctgtggtgcccgtcatctctgtgggctccaccatctaccaa
tcacatgcccttcccggctcggccatggcccacccccacacccagggcctgcacccctac
accaccatccaggcccacctacccactgtctgcaccccccagtacctggggcacccactg
cagcacgtaccccggcccactgtgttccctgtgtcagggggtgcctacccacagtgtgtc
tgtgtgccctctcagggaatgcacccggcctttatcggtgcccagtacccgttctcagtg
gccactggcccccatccgcccatggcagcgacagcggtaaccttccccggtgttcccgtg
ccgtccatgacccagatcgccgtccacccctatcacaccgagaccggcctgcctcttagc
accactgtagcaggagccgcatctttttcccctttctatccagtaggtggcgtccattca
ggcgccacaatccaggccattcaggggtcatctcttcctggaatgtcttctcagcctgtc
tcattggtcagtgcccccttcccgtctgaagacgagcagcatagccagccaatcagccag
cagggccttcactacctgcactcagcatacagagttggcatgctagctttggagatgctt
ggcaggagggctcacaacgaccaccccaataacttctcccgcagccccccatacacagag
gacgtcaagtggctcctgggcctggctgcacggctaggggtgaactacgtgtaccagttc
tgtgtgggtgcggctaagggcgtgctcagccccttcgtccttcaggagatcatcatggag
gctctccagagactgaaccccgcccacatccatgcccacctccgcacgcctgccttccac
caactggtgcagcgctgccagcaggcctacctacagtacatccaccaccggctgatccac
ctgaccccggccgactacgacgactttgtcaacatcatccgcagcgcccgcggggccttc
tgcctgacccctgtgggcatgatgcagttcaacgacgtgctgcagaacctgaagaggggc
aagcagaccaaggagctgtggcagcggatctctctggagatggccaccttctccccatga
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