Salmo trutta (river trout): 115193909
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Entry
115193909 CDS
T08542
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
stru
Salmo trutta (river trout)
Pathway
stru04120
Ubiquitin mediated proteolysis
stru04137
Mitophagy - animal
stru04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115193909 (prkn)
04120 Ubiquitin mediated proteolysis
115193909 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
115193909 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115193909 (prkn)
04121 Ubiquitin system [BR:
stru04121
]
115193909 (prkn)
03029 Mitochondrial biogenesis [BR:
stru03029
]
115193909 (prkn)
Enzymes [BR:
stru01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
115193909 (prkn)
Membrane trafficking [BR:
stru04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
115193909 (prkn)
Aggrephagy
Other aggrephagy associated proteins
115193909 (prkn)
Xenophagy
Other xenophagy associated proteins
115193909 (prkn)
Ubiquitin system [BR:
stru04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
115193909 (prkn)
Mitochondrial biogenesis [BR:
stru03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
115193909 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
115193909
NCBI-ProteinID:
XP_029608914
Ensembl:
ENSSTUG00000015138
UniProt:
A0A673YLI2
LinkDB
All DBs
Position
5:23488792..23583950
Genome browser
AA seq
458 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEEGASIAVLKEKVGMLQGVQPEQLRVIFAGRELLSDGTLQGYD
LPEQSTVHVVLPPPGSGRCSDLALQHRLGRGVDSLTRLDLTSSRLPTTSTGLAVILETDD
EQRAREEPEHTEPRPHSSFYVYCKSVCQAIQPGKLRVRCRACKQGTLTLSRGPSCWDDVL
LPERIHGVCQSEGCLGGVAEFYLKCAAHPTSDDDTSVALDLIMPNVRDVPCIACTDIMSP
VLVSQCPDRHVICLDCFHMYCVTRLNERQFIHHPDVGYSLPCAAGCPDSLITELHHFRAL
GDEQYERYQQYAAEECLLQMGGVLCPAPGCGAGLLPEEDKRMIQCLLSNGLGCGFVFCRD
CKEGFHEGECHVRSSPVSGGALQGYVVDEEAALQARWEQASQETIDETTRPCPHCKVPVE
KSGGCMHMVCPRAQCKFEWCWICRVEWNRECMGNHWFG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgtatgtgaggtttaactccagccatggcttcccagtggagctggaggagggg
gccagcatcgcagtgctgaaggagaaggtggggatgctgcagggggtacagccggagcag
ctgagagtcatctttgctggcagagagctgctcagcgacggcaccctccagggctatgac
ctcccagagcagagtaccgtgcacgtggtgctgcctcccccggggtcgggccggtgctct
gacctggccctgcagcaccgtctgggtcgaggggtggacagcctcacccgcctggacctc
acctcctcccgcctgcccactacctccaccggcctggccgtcatactggaaactgatgac
gagcagagagccagggaagaacctgagcacacagagcccagacctcacagcagcttctat
gtgtactgcaagagtgtgtgccaggccatccagccggggaagctacgcgtgcgctgcaga
gcctgcaagcagggaaccctcaccttgagccggggcccgtcatgttgggacgatgtcctc
ctcccagagcgtatccatggcgtctgtcaatcagagggttgccttggcggagtagcggag
ttttacctgaagtgtgctgcccaccccacctctgatgatgacacatctgtggccctggac
ctcatcatgcccaatgtgcgggatgtcccatgcattgcctgcacagatatcatgagtcca
gtgttggtgtctcagtgtccagaccgccatgtcatttgtctagactgcttccacatgtac
tgtgtgacccgtctcaacgagcgacaattcatccaccacccagatgtcggctactcactt
ccctgtgcagctggctgcccagactctctcataacggagttgcatcacttccgggcccta
ggtgatgaacagtacgagcggtaccagcagtatgcagccgaggagtgtctcctccagatg
ggaggagtgttgtgtccagcccctggatgtggcgcaggcctgctgcctgaggaggacaag
aggatgatccaatgtctgctcagcaacggtttgggatgcgggtttgtgttctgccgtgac
tgtaaggaagggttccatgagggggaatgtcatgtgaggtcatcacctgtctcaggagga
gccctgcagggttatgtagtggacgaggaggcagctcttcaggctcggtgggagcaggcc
tcgcaggagactatagacgagaccacccgtccatgtccacattgcaaggtcccagtggag
aagagtggtggctgtatgcacatggtgtgtccccgtgcccagtgtaagtttgagtggtgc
tggatttgtcgtgtggagtggaacagggagtgtatgggcaaccactggtttggctga
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integrated database retrieval system
